View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17974_high_1 (Length: 568)

Name: NF17974_high_1
Description: NF17974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17974_high_1
NF17974_high_1
[»] chr1 (3 HSPs)
chr1 (52-333)||(30471579-30471862)
chr1 (338-550)||(30472306-30472525)
chr1 (57-182)||(30473644-30473771)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 52 - 333
Target Start/End: Original strand, 30471579 - 30471862
Alignment:
Q  52 gtaaggagaatgccacataggcatgcttgctctttgatgctgacttggctatatttatagggcccacttcaaattaaattgattaattaatcaataatca 151  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30471579 gtaaggagaatgccacataggcatgcttgctatttgatactgacttggctatatttatagggcccacttcaaattaaattgattaattaatcaataaaca 30471678  T
Q  152 tgtttatcaatttgattaatttaacagtaaacaaattgatttattgagtttggtnnnnnnnnnnnnnnnttaatttagttaacaaaataaaagatatata 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||| ||||||||||||||||    
T  30471679 tgtttatcaatttgattaatttaacagtaaacaaattgatttattgagtttggtaaaaaaaactaaaaattaatttagttaacgaaataaaagatatata 30471778  T
Q  252 tctcataa--nnnnnnnnnaaagatatatctcgtaaccgtaccgtagatgttaaaatatgagagtaacatttgatatgctacaa 333  Q
    ||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30471779 tctcataattattttttttaaagatatatctcgtaaccgtaccgtagatgttaaaatatgagagtaacatttgatatgctacaa 30471862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 338 - 550
Target Start/End: Original strand, 30472306 - 30472525
Alignment:
Q  338 aaatatgaggtttgctagttttgtttattgttcgaaacaaaatggagtatgtacttcatatttatcctcataaaaatta-cagtgcct---tgt-cattc 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||  |   |||  ||||    
T  30472306 aaatatgaggtttgctagttttgtttattgttcgaaacaaaatggagtatgtacttcgtatttatcctcataaaaattataagtgaatatatgtgaattc 30472405  T
Q  433 tagaaggatgttgtgaagaaatgttgttcat--aacgaggtacacaagagtattttgttattctggtgaatattgttgtctttcaaatcattgaaggcac 530  Q
     ||||||||| ||||||||||||| ||||||  ||||||||| || |||||||||||||||||| |||||||||||||||||| ||||| ||||||||||    
T  30472406 aagaaggatgatgtgaagaaatgtcgttcatacaacgaggtatacgagagtattttgttattctagtgaatattgttgtcttttaaatcgttgaaggcac 30472505  T
Q  531 gggttttgcttttgaataat 550  Q
    | |||||||| |||||||||    
T  30472506 gagttttgctcttgaataat 30472525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 30473644 - 30473771
Alignment:
Q  57 gagaatgccacataggcatgcttgctctttgatgctgacttggctata-tttatagggcccacttcaaattaaattgattaattaatcaat-aatcatgt 154  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| ||| |||||||||||||||| | |||||| ||||||||    
T  30473644 gagaatgccacataggcatgcttgctatttgatgctaacttggctatagtttatagggcccgcttaaaattaaattgattaactcatcaataaatcatgt 30473743  T
Q  155 ttatcaatttgattaatttaacagtaaa 182  Q
    |||||||||||||||||| |||||||||    
T  30473744 ttatcaatttgattaattcaacagtaaa 30473771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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