View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17974_low_4 (Length: 236)

Name: NF17974_low_4
Description: NF17974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17974_low_4
NF17974_low_4
[»] chr6 (32 HSPs)
chr6 (16-221)||(26145421-26145620)
chr6 (16-221)||(25547392-25547600)
chr6 (16-216)||(25513299-25513493)
chr6 (16-216)||(26058331-26058534)
chr6 (16-216)||(26078301-26078504)
chr6 (20-221)||(25485409-25485613)
chr6 (16-221)||(25582131-25582327)
chr6 (16-124)||(26851093-26851201)
chr6 (19-125)||(27681411-27681517)
chr6 (16-123)||(28794833-28794940)
chr6 (22-124)||(26952207-26952309)
chr6 (16-126)||(27662842-27662952)
chr6 (19-123)||(27696220-27696324)
chr6 (21-123)||(31287005-31287107)
chr6 (21-125)||(26979839-26979943)
chr6 (16-123)||(27675206-27675316)
chr6 (21-123)||(26961540-26961642)
chr6 (16-125)||(26826247-26826356)
chr6 (16-213)||(27602271-27602459)
chr6 (16-123)||(26864032-26864139)
chr6 (16-124)||(26886530-26886641)
chr6 (16-125)||(28788809-28788918)
chr6 (16-124)||(25076275-25076383)
chr6 (21-123)||(27703846-27703948)
chr6 (16-57)||(27425291-27425332)
chr6 (16-57)||(27528970-27529011)
chr6 (16-124)||(26648906-26649014)
chr6 (16-124)||(26754874-26754982)
chr6 (16-213)||(27716048-27716236)
chr6 (154-213)||(31287132-31287191)
chr6 (21-123)||(27590612-27590714)
chr6 (154-210)||(27608671-27608727)
[»] chr4 (13 HSPs)
chr4 (159-216)||(18726585-18726642)
chr4 (16-108)||(18729176-18729268)
chr4 (16-109)||(18677239-18677332)
chr4 (159-216)||(18682309-18682366)
chr4 (16-109)||(18687294-18687387)
chr4 (16-109)||(18697082-18697175)
chr4 (16-57)||(18076223-18076264)
chr4 (159-216)||(18653068-18653125)
chr4 (159-216)||(18721664-18721721)
chr4 (21-109)||(18653157-18653245)
chr4 (159-215)||(18729087-18729143)
chr4 (16-58)||(18721804-18721846)
chr4 (159-216)||(18677150-18677207)
[»] chr1 (2 HSPs)
chr1 (22-123)||(265960-266061)
chr1 (16-123)||(26138358-26138465)
[»] scaffold0277 (1 HSPs)
scaffold0277 (16-125)||(11281-11390)
[»] chr8 (2 HSPs)
chr8 (21-123)||(22023706-22023808)
chr8 (167-213)||(22023842-22023888)
[»] scaffold0003 (1 HSPs)
scaffold0003 (16-57)||(62031-62072)
[»] scaffold0349 (1 HSPs)
scaffold0349 (16-213)||(15709-15897)


Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 26145421 - 26145620
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  26145421 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgcgatattcatttcaaaatttca 26145520  T
Q  116 gtgaacttcaacggttaacaatatctggataccaagggggaaagctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaatgtgga 215  Q
    ||||||||||||||||||||||||||||      |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26145521 gtgaacttcaacggttaacaatatctgg------agggggaaagctcaggttcccaaaatataatgatacaatgaattcaatagtgttttcaaatgtgga 26145614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 25547392 - 25547600
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  25547392 aagaattttccagaattattatgcaagatgacaaatataaaagatatcaagatatatgatacttctatagaagaattgccgtattcatttcaaaatttca 25547491  T
Q  116 gtgaacttcaacggttaacaatatctggat---accaagggggaaagctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaatgt 212  Q
    ||||||||||||||||||||||||||||||   ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25547492 gtgaacttcaacggttaacaatatctggatacgacctagggggaaagctcaggttcccaaaatataatgataaaatgaattcaatagtgttttcaaatgt 25547591  T
Q  213 ggaatatgt 221  Q
    |||| ||||    
T  25547592 ggaacatgt 25547600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 25513299 - 25513493
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  25513299 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatcttcatttcaaaatttca 25513398  T
Q  116 gtgaacttcaacggttaacaatatctggataccaagggggaaagctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaatgtgga 215  Q
    |||||||| |||||||||||||||||||      ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25513399 gtgaactttaacggttaacaatatctgg------aggaggaaagctcaggttcccaaaatataatgataaaatgaattcaatagtgttttcaaatgtgga 25513492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 26058331 - 26058534
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26058331 aagaattttccagaattattatgtgagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatttca 26058430  T
Q  116 gtgaacttcaacggttaacaatatctgga---taccaagggggaaagctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaatgt 212  Q
    || ||||||||||||||||||||||||||    ||| |  ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  26058431 gtaaacttcaacggttaacaatatctggaggcaacctacagggaaagctcaggttcccaaaatataatgataaaatgaattcaatagtgatttcaaatgt 26058530  T
Q  213 ggaa 216  Q
    ||||    
T  26058531 ggaa 26058534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 26078301 - 26078504
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26078301 aagaattttccagaattattatgtgagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaaatttca 26078400  T
Q  116 gtgaacttcaacggttaacaatatctgga---taccaagggggaaagctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaatgt 212  Q
    || ||||||||||||||||||||||||||    ||| |  ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  26078401 gtaaacttcaacggttaacaatatctggaggcaacctacagggaaagctcaggttcccaaaatataatgataaaatgaattcaatagtgatttcaaatgt 26078500  T
Q  213 ggaa 216  Q
    ||||    
T  26078501 ggaa 26078504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 25485409 - 25485613
Alignment:
Q  20 attttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttcagtga 119  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25485409 attttccagaattattatgtaagatgtcaaatataaaagatattaagatatatgatacttccatagaagaattgccatattcatttcaaaatttcagtga 25485508  T
Q  120 acttcaacggttaacaatatctggatacca---agggggaaagctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaatgtggaa 216  Q
    | |||||||||||||||||| ||||||| |   |  ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25485509 aattcaacggttaacaatatatggatactacctaccgggaaagctcaggttccaaaaatataatgataaaatgaattcaatagtgttttcaaatgtggaa 25485608  T
Q  217 tatgt 221  Q
     ||||    
T  25485609 catgt 25485613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 25582131 - 25582327
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||  |||||||||  | |||||||||||||||||||||||||||||||| |||||    
T  25582131 aagaattttccagaattattatgcaagatgagaaatataaaagatatcaagatatatgccatttccatagaagaattgccatattcatttcaaaatttca 25582230  T
Q  116 gtgaacttcaacggttaacaatatctggataccaagggggaaagctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaatgtgga 215  Q
    |||||||||||||||||| ||||||| |||         |  | ||  || ||| ||||||| |||||| ||||||||||||||||||||||||||||||    
T  25582231 gtgaacttcaacggttaaaaatatctagat---------gctacctacggttccgaaaatattatgatacaatgaattcaatagtgttttcaaatgtgga 25582321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 26851093 - 26851201
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| |||||| || ||  ||||||||||| ||||||||||| ||||||| ||| | |||    
T  26851093 aagaattttccagaattattatgcaagatgacaaatatagaagagattgagttacatcgtacttccataggagaattgccatcttcatttaaaaatctca 26851192  T
Q  116 gtgaacttc 124  Q
    |||||||||    
T  26851193 gtgaacttc 26851201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 27681411 - 27681517
Alignment:
Q  19 aattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttcagtg 118  Q
    |||||||||||||||||||| |||||| || |||||||||| ||||| |||| | |||||||||||| |||| |||||| ||||||||||| | ||||||    
T  27681411 aattttccagaattattatgcaagatggcacatataaaagagattgatatatctaatacttccataggagaactgccattttcatttcaaaatctcagtg 27681510  T
Q  119 aacttca 125  Q
    |||||||    
T  27681511 aacttca 27681517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 28794833 - 28794940
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    |||||||||||| |||||||||| |||||||||||||| ||||| ||||  |||| | |||||||||||| ||||||||||| ||||||||||| | |||    
T  28794833 aagaattttccaaaattattatgcaagatgacaaatatcaaagagattggtatatcttatacttccataggagaattgccatcttcatttcaaaatctca 28794932  T
Q  116 gtgaactt 123  Q
     |||||||    
T  28794933 atgaactt 28794940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 26952207 - 26952309
Alignment:
Q  22 tttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttcagtgaac 121  Q
    ||||||||||||||||| |||||||||||||||||||| |||  ||||||||| || ||||||| ||||||||||| |||||||  || | |||||||||    
T  26952207 tttccagaattattatgcaagatgacaaatataaaagagattacgatatatgaaacatccataggagaattgccattttcatttggaaatctcagtgaac 26952306  T
Q  122 ttc 124  Q
    |||    
T  26952307 ttc 26952309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 27662952 - 27662842
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    |||| |||||||||||||||||| |||||| ||||||||||||| |||  | ||| ||||||||||||||||||| |||||| ||||||| ||| | |||    
T  27662952 aagagttttccagaattattatgcaagatgtcaaatataaaagagatttggttatgtgatacttccatagaagaaatgccattttcatttaaaaatctca 27662853  T
Q  116 gtgaacttcaa 126  Q
     ||||||||||    
T  27662852 atgaacttcaa 27662842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 27696324 - 27696220
Alignment:
Q  19 aattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttcagtg 118  Q
    |||||||||||||||||||| |||||| || |||||||||| ||||| |||| | ||| |||||||| | || |||||| ||||||||||| | ||||||    
T  27696324 aattttccagaattattatgcaagatggcacatataaaagagattgatatattttatatttccataggaaaactgccattttcatttcaaaatctcagtg 27696225  T
Q  119 aactt 123  Q
    |||||    
T  27696224 aactt 27696220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 31287005 - 31287107
Alignment:
Q  21 ttttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttcagtgaa 120  Q
    |||||||||||||||||| ||||||||||||||||||  ||||  | |   | |||||||||||| ||||||||||| ||||||||||| | ||||||||    
T  31287005 ttttccagaattattatgcaagatgacaaatataaaacgtattttgtttgttaatacttccataggagaattgccatcttcatttcaaaatctcagtgaa 31287104  T
Q  121 ctt 123  Q
    |||    
T  31287105 ctt 31287107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 26979839 - 26979943
Alignment:
Q  21 ttttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttcagtgaa 120  Q
    ||||||||||||||||||| | |||| |||||||||| | |||| | | | | |||||||||||| ||||||||||| ||||||||||  | ||||||||    
T  26979839 ttttccagaattattatgtcaaatgaaaaatataaaaaagattgggttctctaatacttccataggagaattgccattttcatttcaatatctcagtgaa 26979938  T
Q  121 cttca 125  Q
    |||||    
T  26979939 cttca 26979943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 27675316 - 27675206
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagata---tatgatacttccatagaagaattgccatattcatttcaaagtt 112  Q
    |||| |||||||||||||||||| |||||||||||||| ||||| |||||  ||   ||| |||  ||||||| ||||||||||| ||||||||||| |     
T  27675316 aagagttttccagaattattatgcaagatgacaaatatcaaagagattgatttagattataatatatccataggagaattgccatcttcatttcaaaatc 27675217  T
Q  113 tcagtgaactt 123  Q
    |||||||||||    
T  27675216 tcagtgaactt 27675206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 26961540 - 26961642
Alignment:
Q  21 ttttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttcagtgaa 120  Q
    ||||||||||||||||||  | ||||||||||||||||| ||| |  | | |||||||||||||| |||||| |||| ||||||||||  | ||||||||    
T  26961540 ttttccagaattattatgccaaatgacaaatataaaagagattaatctttgtgatacttccataggagaatttccattttcatttcaatatctcagtgaa 26961639  T
Q  121 ctt 123  Q
    |||    
T  26961640 ctt 26961642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 26826247 - 26826356
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    |||| ||||||| ||||||||||| |||||||||| |||||||  |||    | |||||||||||||||| ||||||||||| |||||||| || | |||    
T  26826247 aagagttttccaaaattattatgtgagatgacaaaaataaaaggaatttgtttgtatgatacttccataggagaattgccatcttcatttcgaaatctca 26826346  T
Q  116 gtgaacttca 125  Q
     |||||||||    
T  26826347 atgaacttca 26826356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 27602459 - 27602271
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||  | |  |||| |||| ||| |||   || |||| |||| |||||| | |||    
T  27602459 aagagttttccagaattattatgcaagatgacaaatttaaaagatatttggttgaatgaaacttgcatggaa---tttccattttcaattcaaaatctca 27602363  T
Q  116 gtgaacttcaacggttaacaatatctggataccaagggggaaagctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaatgtg 213  Q
    |||||||| | || |||  ||||| |      ||| | |||| ||||||| |||||||| | ||||||||||||||||| ||||| ||||||||||||    
T  27602362 gtgaacttgatcgcttacaaatatat------caatgtggaatgctcaggttcccaaaacaaaatgataaaatgaattctatagtattttcaaatgtg 27602271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 26864032 - 26864139
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    |||| |||||||||||||||||| ||||||| |||||||||||| ||   | | | ||| |||||||||  ||||||| ||| ||||||||||| | |||    
T  26864032 aagagttttccagaattattatgcaagatgataaatataaaagagatccggttgtctgaaacttccataagagaattgtcattttcatttcaaaatctca 26864131  T
Q  116 gtgaactt 123  Q
    ||||||||    
T  26864132 gtgaactt 26864139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 26886530 - 26886641
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgat---acttccatagaagaattgccatattcatttcaaagtt 112  Q
    ||||| || |||||||||||||| |||||||||||| ||||||| |||| | || || ||   |||||||||| || |||||||| ||||||| ||| |     
T  26886530 aagaaattcccagaattattatgcaagatgacaaatttaaaagagattgcgttacataataacacttccataggaggattgccattttcatttgaaaatc 26886629  T
Q  113 tcagtgaacttc 124  Q
    ||||||||||||    
T  26886630 tcagtgaacttc 26886641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 28788809 - 28788918
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    |||| ||||||| |||||||||| |||||||||||||| ||| | |||  | |  |  |||||||||||  ||||||||||| ||||||||||| | |||    
T  28788809 aagagttttccaaaattattatgcaagatgacaaatattaaaaagatttggttgcagaatacttccataagagaattgccatcttcatttcaaaatctca 28788908  T
Q  116 gtgaacttca 125  Q
    ||||||||||    
T  28788909 gtgaacttca 28788918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 25076275 - 25076383
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    |||| ||||||||||||||| || |||||||||||| | |||  ||||  | |  | | ||||||||||| ||||||||||| ||||||||||| | |||    
T  25076275 aagagttttccagaattattgtgcaagatgacaaatttgaaaagtattttgttggacggtacttccataggagaattgccattttcatttcaaaatctca 25076374  T
Q  116 gtgaacttc 124  Q
    |||||||||    
T  25076375 gtgaacttc 25076383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 27703948 - 27703846
Alignment:
Q  21 ttttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttcagtgaa 120  Q
    |||||||||||||||||| ||||||||||||||| |  |||||  | |  |  ||||||| |||| |||| |||||| ||||||||||| | ||||||||    
T  27703948 ttttccagaattattatgcaagatgacaaatatagataatatttggttgcagcatacttctataggagaactgccattttcatttcaaaatctcagtgaa 27703849  T
Q  121 ctt 123  Q
    |||    
T  27703848 ctt 27703846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 27425332 - 27425291
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaa 57  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  27425332 aagagttttccagaattattatgcaagatgacaaatataaaa 27425291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 27529011 - 27528970
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaa 57  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  27529011 aagagttttccagaattattatgcaagatgacaaatataaaa 27528970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 26648906 - 26649014
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    ||||||||||||||||||||||| || |||| |||||||||| |||||    | | |   ||||| |||| ||||||||||| ||||||||| | | |||    
T  26648906 aagaattttccagaattattatgcaaaatgagaaatataaaacatatttttttgtctagaacttcaataggagaattgccatcttcatttcataatctca 26649005  T
Q  116 gtgaacttc 124  Q
    |||||||||    
T  26649006 gtgaacttc 26649014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 26754874 - 26754982
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    ||||||||||||||||||||||| || |||| |||||||||| |||||    | | |   ||||| |||| ||||||||||| ||||||||| | | |||    
T  26754874 aagaattttccagaattattatgcaaaatgagaaatataaaacatatttttttgtctagaacttcaataggagaattgccatcttcatttcataatctca 26754973  T
Q  116 gtgaacttc 124  Q
    |||||||||    
T  26754974 gtgaacttc 26754982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 27716236 - 27716048
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    |||| |||||||||||||||||| ||||||||||||||| |  |||||  | | | | |||||||||||| |||| |||||| ||||||||||| | | |    
T  27716236 aagagttttccagaattattatgcaagatgacaaatatagacaatatttggttgtgtaatacttccataggagaactgccattttcatttcaaaatctta 27716137  T
Q  116 gtgaacttcaacggttaacaatatctggataccaagggggaaagctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaatgtg 213  Q
    ||||||||||   |||| || |  |   |||       |||| ||| ||| |||||||| | |||||||| ||| |||||||||||||||||||||||    
T  27716136 gtgaacttcataagttatcagtgac---atat------ggaatgctgaggttcccaaaacagaatgataagatgtattcaatagtgttttcaaatgtg 27716048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 31287132 - 31287191
Alignment:
Q  154 ggaaagctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaatgtg 213  Q
    |||| ||| ||| |||||||| ||||||| ||||| ||||| ||||||||||||||||||    
T  31287132 ggaatgctgaggttcccaaaacataatgacaaaattaattctatagtgttttcaaatgtg 31287191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 27590714 - 27590612
Alignment:
Q  21 ttttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttcagtgaa 120  Q
    ||||||| |||||||||| ||||||||||||||| |  | |||  | | |   |||||||||||  ||||||||||| ||||||||||| | ||||||||    
T  27590714 ttttccaaaattattatgcaagatgacaaatatagacaagatttggttttggtatacttccatacgagaattgccatcttcatttcaaaatctcagtgaa 27590615  T
Q  121 ctt 123  Q
    |||    
T  27590614 ctt 27590612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 27608727 - 27608671
Alignment:
Q  154 ggaaagctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaat 210  Q
    |||| ||| ||| |||||||| | |||||||| ||| ||||||||||||||||||||    
T  27608727 ggaacgctgaggttcccaaaacagaatgataagatgtattcaatagtgttttcaaat 27608671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 18726642 - 18726585
Alignment:
Q  159 gctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaatgtggaa 216  Q
    ||||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||    
T  18726642 gctcaggttcccaaaacataatgataaaatgtattcaataatgttttcaaatgtggaa 18726585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 18729268 - 18729176
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaa 108  Q
    |||| |||||||||||||||||||||||||||||||| |||||| ||||  || | | | ||||||| |  ||||||||||| ||||||||||    
T  18729268 aagagttttccagaattattatgtaagatgacaaatacaaaagagattggaatgtgtaaaacttccacaagagaattgccattttcatttcaa 18729176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 18677332 - 18677239
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaa 109  Q
    |||| |||||||||||||||||||||||||||||||| |||||| ||||  || | |   ||||||| |  ||||||||||| |||||||||||    
T  18677332 aagagttttccagaattattatgtaagatgacaaatacaaaagagattggaatgtgtataacttccacaacagaattgccattttcatttcaaa 18677239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 18682366 - 18682309
Alignment:
Q  159 gctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaatgtggaa 216  Q
    ||||||| |||||||| |||||||||||||| |||||||| ||||||| |||||||||    
T  18682366 gctcaggttcccaaaacataatgataaaatgtattcaataatgttttcgaatgtggaa 18682309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 18687387 - 18687294
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaa 109  Q
    |||| |||||||||||||||||||||||||||||||| |||||| ||||  || | |   ||||||| |  ||||||||||| |||||||||||    
T  18687387 aagagttttccagaattattatgtaagatgacaaatacaaaagagattggaatgtgtataacttccacaagagaattgccattttcatttcaaa 18687294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 18697175 - 18697082
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaa 109  Q
    |||| |||||||||||||||||||||||||||||||| |||||| ||||  || | |   ||||||| |  ||||||||||| |||||||||||    
T  18697175 aagagttttccagaattattatgtaagatgacaaatacaaaagagattggaatgtgtacaacttccacaagagaattgccattttcatttcaaa 18697082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 18076223 - 18076264
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaa 57  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  18076223 aagagttttccagaattattatgcaagatgacaaatataaaa 18076264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 18653125 - 18653068
Alignment:
Q  159 gctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaatgtggaa 216  Q
    ||||||| |||||||| ||||||| |||||| |||| ||| |||||||||||||||||    
T  18653125 gctcaggttcccaaaacataatgagaaaatgtattctataatgttttcaaatgtggaa 18653068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 18721721 - 18721664
Alignment:
Q  159 gctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaatgtggaa 216  Q
    ||||||| |||||||| ||||||| |||||| |||| ||| |||||||||||||||||    
T  18721721 gctcaggttcccaaaacataatgagaaaatgtattctataatgttttcaaatgtggaa 18721664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 18653245 - 18653157
Alignment:
Q  21 ttttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaa 109  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||  || | |   ||||||| |  ||||||||||| |||||||||||    
T  18653245 ttttccagaactattatgtaagatgacaaatacaaaagagattggaatgtgtataacttccacaagagaattgccattttcatttcaaa 18653157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 18729143 - 18729087
Alignment:
Q  159 gctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaatgtgga 215  Q
    ||||||| |||||||| ||||||| |||||| |||| ||| ||||||||||||||||    
T  18729143 gctcaggttcccaaaacataatgagaaaatgtattctataatgttttcaaatgtgga 18729087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 18721846 - 18721804
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaag 58  Q
    |||| |||||||||| ||||||||||||||||||||| |||||    
T  18721846 aagagttttccagaactattatgtaagatgacaaatacaaaag 18721804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 18677207 - 18677150
Alignment:
Q  159 gctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaatgtggaa 216  Q
    ||||||| || ||||| ||||||| |||||| ||||||||  ||||||||||||||||    
T  18677207 gctcaggttcacaaaacataatgagaaaatgtattcaataaggttttcaaatgtggaa 18677150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 266061 - 265960
Alignment:
Q  22 tttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttcagtgaac 121  Q
    |||||| |||||||||| ||||||||||||||| || |||||  | | ||||| |||||||||  ||||||||||| ||||||||||| | |||||| ||    
T  266061 tttccaaaattattatgcaagatgacaaatatagaaaatattttgttgtatgaaacttccataagagaattgccatcttcatttcaaaatctcagtggac 265962  T
Q  122 tt 123  Q
    ||    
T  265961 tt 265960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 26138358 - 26138465
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    |||| ||||||||||||| |  ||| | |||||||||||||||| |||  | | ||||  || ||||||| ||||||||||| ||||||||||| |||||    
T  26138358 aagagttttccagaattagttggtaggttgacaaatataaaagacatttggttgtatggaacctccataggagaattgccattttcatttcaaaatttca 26138457  T
Q  116 gtgaactt 123  Q
    ||||||||    
T  26138458 gtgaactt 26138465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 11390 - 11281
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    |||| ||||||| |||||||||| |||||||||||||| ||| | |||  | |  |  |||||||||||  ||||||||||| ||||||||||| | |||    
T  11390 aagagttttccaaaattattatgcaagatgacaaatattaaaaagatttggttgcagaatacttccataagagaattgccatcttcatttcaaaatctca 11291  T
Q  116 gtgaacttca 125  Q
    ||||||||||    
T  11290 gtgaacttca 11281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 22023706 - 22023808
Alignment:
Q  21 ttttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttcagtgaa 120  Q
    ||||||| |||||||||| ||||||| ||||||| || |||||  | | ||| |||||||||||  ||||||||||| ||| ||||||| | ||||| ||    
T  22023706 ttttccaaaattattatgcaagatgaaaaatatagaatatatttcgttgtataatacttccataagagaattgccatcttcttttcaaaatctcagtaaa 22023805  T
Q  121 ctt 123  Q
    |||    
T  22023806 ctt 22023808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 22023842 - 22023888
Alignment:
Q  167 tcccaaaatataatgataaaatgaattcaatagtgttttcaaatgtg 213  Q
    ||||||||||||||||||||||  |||| ||||||||| ||||||||    
T  22023842 tcccaaaatataatgataaaatttattctatagtgtttccaaatgtg 22023888  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 62031 - 62072
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaa 57  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  62031 aagagttttccagaattattatgcaagatgacaaatataaaa 62072  T

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Target: scaffold0349 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 15709 - 15897
Alignment:
Q  16 aagaattttccagaattattatgtaagatgacaaatataaaagatattgagatatatgatacttccatagaagaattgccatattcatttcaaagtttca 115  Q
    |||| |||||||||||||||||| ||||||||||||||| |  |||||  | | | | |||||||||||| |||| |||||| ||||||||||| | | |    
T  15709 aagagttttccagaattattatgcaagatgacaaatatagacaatatttggttgtgtaatacttccataggagaactgccattttcatttcaaaatctta 15808  T
Q  116 gtgaacttcaacggttaacaatatctggataccaagggggaaagctcaggctcccaaaatataatgataaaatgaattcaatagtgttttcaaatgtg 213  Q
    ||||||||||   |||| || |  |   |||       |||| ||| ||| |||||||| | |||||||| ||| |||||||||||||||||||||||    
T  15809 gtgaacttcataagttatcagtgac---atat------ggaatgctgaggttcccaaaacagaatgataagatgtattcaatagtgttttcaaatgtg 15897  T

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