View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17975_high_2 (Length: 496)
Name: NF17975_high_2
Description: NF17975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17975_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 38260752 - 38261228
Alignment:
| Q |
1 |
tcatcatcaataacaacaagaacaacaacatgatgatgacaatgaatacttatgttgctgcttcttctcatcttgatctccatgtaggcttatcatcaca |
100 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260752 |
tcatcatcaataacaacaagaataacaacatgatgatgacaatgaatacttatgttgctgcttcttctcatcttgatctccatgtaggcttatcatcaca |
38260851 |
T |
|
| Q |
101 |
atcacaagaactgccttctcaaacaattaatatttcagttgctgatgttggggatgttaacaagaacgatatgagaaagaagaagaagagaaatgaaaat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260852 |
atcacaagaactgccttctcaaacaattaatatttcagttgctgatgttggg-atgttaacaagaacgatatgagaaagaagaagaagagaaatgaaaat |
38260950 |
T |
|
| Q |
201 |
attaatgatggaagaatccacagcctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260951 |
attaatgatggaagaatccacagcctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgcta |
38261050 |
T |
|
| Q |
301 |
atcatgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaa |
400 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38261051 |
atcatgtttcatcaagtcactgcaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcagattcaaaa |
38261150 |
T |
|
| Q |
401 |
gctcaatgatggaacaactacttttgttcctgttattgcttgtggtgataagtcaaatgcttctgtcaatgatgatgg |
478 |
Q |
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| T |
38261151 |
gctcaatgatggaacaactacttttgttcctgttattgcttgtggtgataagtcacatgcttatgtcaatgatgatgg |
38261228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 477
Target Start/End: Original strand, 38244467 - 38244927
Alignment:
| Q |
14 |
caacaagaacaacaacatgatgatgacaatgaatacttatgttgctgcttcttctcatcttgatctccatgtaggcttatcatcacaatcacaagaactg |
113 |
Q |
| |
|
|||||| |||||||||| |||||||| ||||||||||| | || ||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
38244467 |
caacaacaacaacaacaagatgatgaaaatgaatacttcta---ctacttcttctcatcttgatcttcatgtaggcttatcatcacaactacaagaactg |
38244563 |
T |
|
| Q |
114 |
ccttctcaaacaattaatatttcagttgctgatgttggggatgttaacaagaacgatatgagaaagaagaagaagagaaatgaaaatattaatgatggaa |
213 |
Q |
| |
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||||||||||| || ||| | | ||| |||||||| ||||| |||||||||| |||| || |||||||||||||| ||||||||||| ||||||| | |
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| T |
38244564 |
ccttctcaaactatcaatttatttgttactgatgttagggatattaacaagaatgataaaaggaagaagaagaagagcaatgaaaatatcgatgatggta |
38244663 |
T |
|
| Q |
214 |
gaatccacagcctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatc |
313 |
Q |
| |
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||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38244664 |
aaattcacagcctaccacacgagaaacatggaccatacccatgttcccaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatc |
38244763 |
T |
|
| Q |
314 |
aagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatgga |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
38244764 |
aagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgatgga |
38244863 |
T |
|
| Q |
414 |
acaactacttttgttcctgttattgcttgtggtgataagtcaaatgcttctgtcaatgatgatg |
477 |
Q |
| |
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| ||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||| |||||| |
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| T |
38244864 |
agaactacttttgttcctgttgttgcttgtgctgataagtcacatgcttcaatcaataatgatg |
38244927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 200 - 441
Target Start/End: Complemental strand, 47285737 - 47285499
Alignment:
| Q |
200 |
tattaatgatggaagaatccacagcctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgct |
299 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||| ||||| ||| ||||||| ||| | |||||| | ||||||||| || | | ||||||||| ||||| ||| |
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| T |
47285737 |
tattgatgatggtagaatccacagtctacctcacaataaacatggaccgtacacgtgttcagagtgcaacaaagtaatagcaacatcacagaaattcgct |
47285638 |
T |
|
| Q |
300 |
aatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaa |
399 |
Q |
| |
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|||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| || ||| || ||||||| |
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|
| T |
47285637 |
gctcatgt---atcaagtcactacaagactgaaagtgaagaagagagaaaaaagagatacatgtctaggatccgaaagagaccatatctccagattcaaa |
47285541 |
T |
|
| Q |
400 |
agctcaatgatggaacaactacttttgttcctgttattgctt |
441 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||| ||||||| |
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|
| T |
47285540 |
agctcgatgatggaacaactactcttgtttctgtcattgctt |
47285499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 205 - 430
Target Start/End: Complemental strand, 47307289 - 47307067
Alignment:
| Q |
205 |
atgatggaagaatccacagcctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgctaatca |
304 |
Q |
| |
|
||||||| |||| |||||| ||| ||||||| ||| |||||||||| | ||| |||| || |||||| || | | |||||||||||||||||||| ||| |
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| T |
47307289 |
atgatggtagaacccacagtctatcacacaataaaaatggaccatatacgtgtccaaagtgtaacaaagtactagcaacatcacaaaaatttgctagtca |
47307190 |
T |
|
| Q |
305 |
tgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctc |
404 |
Q |
| |
|
|| |||||| |||||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||| || ||| | | ||||||||| |
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|
| T |
47307189 |
tg---catcaatacactacaagtcagaaagtgaagaagagaaaaaaaagagatacatgtctaggatccgaaagagaccagatctccgattccaaaagctc |
47307093 |
T |
|
| Q |
405 |
aatgatggaacaactacttttgttcc |
430 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
47307092 |
aatgatggaacaactacttttgttcc |
47307067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 313 - 441
Target Start/End: Complemental strand, 2589674 - 2589546
Alignment:
| Q |
313 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatgg |
412 |
Q |
| |
|
||||||||||||||| |||| | |||||| ||||||||||||||||| |||| ||| |||||||| || ||| | |||||||||||||||||||| |
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|
| T |
2589674 |
caagtcactacaagtctgaaactctagaagagagaaaaaagagatacatgtctaagatccgaaagagaccaaatctccggattcaaaagctcaatgatgg |
2589575 |
T |
|
| Q |
413 |
aacaactacttttgttcctgttattgctt |
441 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |
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|
| T |
2589574 |
aacaactacttttgttccagttgttgctt |
2589546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 2589833 - 2589914
Alignment:
| Q |
348 |
aaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactacttttgttc |
429 |
Q |
| |
|
|||||||||||||| |||||||| | |||||| || ||||||||||||||| ||||||| ||||||||| |||||||||| |
|
|
| T |
2589833 |
aaaaagagatacatgtctaggatcccaaagagaccaaatcttcatattcaaaaactcaatgttggaacaacaacttttgttc |
2589914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 313 - 430
Target Start/End: Complemental strand, 10299735 - 10299617
Alignment:
| Q |
313 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaa-gagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatg |
411 |
Q |
| |
|
||||||||||||||| |||| | |||||| |||||||| ||||||||| |||| ||| |||||| || ||| || |||||||||||||||||| |
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|
| T |
10299735 |
caagtcactacaagtctgaaactctagaagagagaaaaaaagagatacatgtctatgatctaaaagagaccaaatctccagattcaaaagctcaatgata |
10299636 |
T |
|
| Q |
412 |
gaacaactacttttgttcc |
430 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
10299635 |
gaacaactacttttgttcc |
10299617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 228 - 428
Target Start/End: Original strand, 22222449 - 22222647
Alignment:
| Q |
228 |
ccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaa-tatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactacaag |
326 |
Q |
| |
|
|||||||| ||| ||||| ||||| | ||| |||| |||||||||| || || |||||| ||||||||||||| |||||| ||||||||||||| |
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|
| T |
22222449 |
ccacacaataaacatggatcatacacgtgtgcaaagtgcaacaaaagtaatttcaacatcccaaaaatttgctagtcatgt---ggcaagtcactacaat |
22222545 |
T |
|
| Q |
327 |
ttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactacttttg |
426 |
Q |
| |
|
|| |||| | ||||||| ||||||||||||||||| |||||||| | |||||| | ||| || |||||||| ||||||| ||||||||| || |||| |
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|
| T |
22222546 |
tttgaaactcaagaagaaagaaaaaagagatacatgtctaggatcccaaagagaacaaatctgcagattcaaaaactcaatgttggaacaacaacatttg |
22222645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 429
Target Start/End: Complemental strand, 22222382 - 22222289
Alignment:
| Q |
338 |
agaagacagaaaaaagagatacatttctaggattcgaaagagg--ccgcgtcttcatattcaaaagctcaatgatggaacaactacttttgttc |
429 |
Q |
| |
|
|||||| | ||||||||||||||| |||||||| |||||||| || ||| | ||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
22222382 |
agaagagaaaaaaaagagatacatgtctaggatccgaaagagtgaccaaatctccggattcataagatcaatgatggaacaactacttttgttc |
22222289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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