View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17975_high_3 (Length: 299)
Name: NF17975_high_3
Description: NF17975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17975_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 27068987 - 27069173
Alignment:
| Q |
25 |
aggtgtatgccacaagatatatgacaagaaattcaaccttagtatttgtttactatatagtgtaatcaatgtaatatgtcttttgcgtgatattgacata |
124 |
Q |
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| T |
27068987 |
aggtgtatgccacaagatatatgacaagaaattcaactttagtatttgtttactatatagtgtaatcaatgtaatatgtcttttgcgtgatattgacata |
27069086 |
T |
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| Q |
125 |
aataaaaataaaagtgtcgaatattatttttacagaagtgttgagtatctttaaactttagtatactaaaaaccaatcattcaatcc |
211 |
Q |
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| T |
27069087 |
aataaaaataaaagtgtcgaatattatttttacagaagtgttgagtatctttaaactttagtatactaaaaaccaatcattcaatcc |
27069173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 27209326 - 27209140
Alignment:
| Q |
25 |
aggtgtatgccacaagatatatgacaagaaattcaaccttagtatttgtttactatatagtgtaatcaatgtaatatgtcttttgcgtgatattgacata |
124 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27209326 |
aggtgtatgccacaagatatatgacaagaaattcaactttagtatttgtttactatatagtgtaatcaatgtaatatgtcttttgcgtgatattgacata |
27209227 |
T |
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| Q |
125 |
aataaaaataaaagtgtcgaatattatttttacagaagtgttgagtatctttaaactttagtatactaaaaaccaatcattcaatcc |
211 |
Q |
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| T |
27209226 |
aataaaaataaaagtgtcgaatattatttttacagaagtgttgagtatctttaaactttagtatactaaaaaccaatcattcaatcc |
27209140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 27069215 - 27069243
Alignment:
| Q |
257 |
tctataaggactatgtgctagctgctttt |
285 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
27069215 |
tctataaggactatgtgctagctgctttt |
27069243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 27209098 - 27209070
Alignment:
| Q |
257 |
tctataaggactatgtgctagctgctttt |
285 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
27209098 |
tctataaggactatgtgctagctgctttt |
27209070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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