View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17975_high_5 (Length: 258)
Name: NF17975_high_5
Description: NF17975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17975_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 46397436 - 46397211
Alignment:
| Q |
13 |
catcaaattttgaaatgtaatgtaaaatgaacatatagaagtccagaaagtaggccaatcaactaaataacaggaacaacaaaacagaagccggtgaaac |
112 |
Q |
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| T |
46397436 |
catcaaattttgaaatgtaatgtaaaatgaacatatagaagtccagaaagtaggccaatcaactaaataacaggaacaacaaaacagaagccggtgaaac |
46397337 |
T |
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| Q |
113 |
tattatagtattctacgggcaacgcaaactgcaagcataacaaatgtcaggagagtttaaagatgaatgattctaaatgtcagtgacgaaacaaatgtga |
212 |
Q |
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| T |
46397336 |
tattatagtattctacgggcaacgcaaactgcaagcataacaaatgtcgggagagtttaaagatgaatgattctaaatgtcagtgacgaaacaaatg--- |
46397240 |
T |
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| Q |
213 |
tgacacaatgaagttctccttgggaccaa |
241 |
Q |
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| T |
46397239 |
tgacacaatgaagttctccttgggaccaa |
46397211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 241
Target Start/End: Complemental strand, 7217271 - 7217098
Alignment:
| Q |
73 |
aactaaataacaggaacaacaaaacagaagccggtgaaactattatagtattctacgggcaacgcaaactgcaagcataac---------aaatgtcagg |
163 |
Q |
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| T |
7217271 |
aactcaataacaagaacaacaaaacagaagccggtgaaactaatacaatactctaggcgtagcgcaaaccgcaagcaaaacctgcttgtcaaatgtcaag |
7217172 |
T |
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| Q |
164 |
agagtttaaagatgaatgattctaaatgtcagtgacgaaacaaatgtgatgacacaatgaagttctccttgggaccaa |
241 |
Q |
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| T |
7217171 |
agagtc-aaagatgaatgattctaaatgtcagtaacaaaacaaatg---tgacacaatgaggttctccttgggaccaa |
7217098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 7217415 - 7217359
Alignment:
| Q |
13 |
catcaaattttgaaatgtaatgtaaaatgaacatatagaagtccagaaagtaggcca |
69 |
Q |
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| T |
7217415 |
catcagattttgaaattcaaagtaaaatgaacatatagaagtccagaaagtaagcca |
7217359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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