View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17975_low_1 (Length: 507)
Name: NF17975_low_1
Description: NF17975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17975_low_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 507
Target Start/End: Complemental strand, 36465017 - 36464523
Alignment:
| Q |
18 |
atgtgggaaaatgaacaaaatcaaccaagcatgggagacataaattcactttgacttgtcattatggtacatttttgtagccgagaagcggaaaatataa |
117 |
Q |
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| T |
36465017 |
atgtgggaaaatgaacaaaatcaaccaggcgtgggagacataaattcactttgacttgtcattatggtacatttttgtagccgagaagcggaaaatataa |
36464918 |
T |
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| Q |
118 |
agtattctgcggttaagcttcgattgctcaattaaggaaggatatgccactactatgatgagagtagagacattcttggttaagagagtgagagttggag |
217 |
Q |
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| T |
36464917 |
agtattctgcggttaagcttcgattgctcaattaagga----tatgccactactatgatgagagtagagacattcttggttaagagagtgagagttggag |
36464822 |
T |
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| Q |
218 |
gagttagtgagagaatgtaaaagagcaacttgaggaataa---------catttttctatatatccttctacttctaattcataagtgtttggagcacct |
308 |
Q |
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| T |
36464821 |
gagttagtgagagaatgtgaaagagcaacttgaggaataatatctcaaccatttttctatatatccttctacttctaattcataagtgttttgagcacct |
36464722 |
T |
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| Q |
309 |
cgttttgaattgaattgtatgtcacagttagtaattaaaacttacaaaaaatgagaaaaattgctgctaaagcactccaacagtacaaacacatttaaca |
408 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36464721 |
cgttttgaattgaattgtatgtcacagttagtaattagaactttcaaaaaatgagaaaaattgctgctaaagcactccaacagtacaaacacatttaaca |
36464622 |
T |
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| Q |
409 |
ttcttcaacgatcatctacaaaagaaatggaatcttgctttgcagcatgaccatgtcaaactctatgcaccacaaacaatcattaaagcggggtacaat |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36464621 |
ttcttcaacgatcatctacaaaagaaatggaatcttgctttgcagcatgaccatgtcaaactctatgtaccacaaacaatcattaaagcggggtacaat |
36464523 |
T |
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