View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17975_low_3 (Length: 369)
Name: NF17975_low_3
Description: NF17975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17975_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 782009 - 781668
Alignment:
| Q |
18 |
ccacttagagaaacgtagttcagacattaatatcaacttactatatatgctgattcttcaccagtaaagctataattagcatccttgctgcctacacaac |
117 |
Q |
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| T |
782009 |
ccacttagagaaacgtagttcagacattaatatcaacttactatatatgctgattcttcaccagtaaagctataattagcatccttgatgcctacacaac |
781910 |
T |
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| Q |
118 |
ttgattgtggcannnnnnnnncccgagaagataagagtgtcgaagcatataagatgaatacgagaaaattaaactagaagttactcttnnnnnnnnntca |
217 |
Q |
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| T |
781909 |
ttgattgtggcatttttttttcccgagaagataagagtgtcgaagcatataagatgaatacgagaaaattaaactagaagttactcttaaaaaaaaatca |
781810 |
T |
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| Q |
218 |
gcaagaattaattgcataatgtggatcttacaagtctcatacaaagtataagtatcgctaagatcacatcatatccgtttcacaataagaatgacaaata |
317 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
781809 |
gcaagaattaattgcataatgtggaccttacaagtctcatacaaagtataagtattgccaagatcacatcatatccgtttcacaataagaatgacaaata |
781710 |
T |
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| Q |
318 |
tttaccatatctactcttaaatatttaccatctacccctatg |
359 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
781709 |
tttaccatatctactcttaaatatttaccatctacccttatg |
781668 |
T |
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