View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17975_low_9 (Length: 238)
Name: NF17975_low_9
Description: NF17975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17975_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 9335255 - 9335341
Alignment:
| Q |
135 |
gggtgaaaaacatgactagtagatgtgaaggtattggtgtgtaaaatatggttttaaattgcggttacggtcactgcgagtctacta |
221 |
Q |
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| T |
9335255 |
gggtgaaaaacatgactagtagatgtaaaggtattgatgtgtaaactatggttttaaattgcggttacggtcactgtgagtctacta |
9335341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 8208036 - 8208195
Alignment:
| Q |
19 |
ccaaaccttaaagcttgactcataacatctattgcaggcccctgcgcattacttcctctgtactttattgctttctccattgcatcctaaaattaccaaa |
118 |
Q |
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| T |
8208036 |
ccaaaccttaaagcttgaaacataacatctattgcaggcaccactgctttagcaactttattctttattgctttctccattgcatcctaaaattaccaaa |
8208135 |
T |
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| Q |
119 |
atcctaaataaagaaagggtgaaaaacatgactagtagatgtgaaggtattggtgtgtaaa |
179 |
Q |
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| T |
8208136 |
a-gcttaataatgaaaggatgaaaagcatgactagtagatgcgaagttattgatgtgtaaa |
8208195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 9941578 - 9941738
Alignment:
| Q |
19 |
ccaaaccttaaagcttgactcataacatctattgcaggcccctgcgcattacttcctctgtactttattgctttctccattgcatcctaaaattaccaaa |
118 |
Q |
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| T |
9941578 |
ccaaaccttaaagcttgaaacataacatctattgcaggcaccaccgctttagcaaattttttctttatcactttctccattgcatcctaaaatcaccaaa |
9941677 |
T |
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| Q |
119 |
atcctaaataaagaaagggtgaaaa-acatgactagtagatgtgaaggtattggtgtgtaaa |
179 |
Q |
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| T |
9941678 |
a-ccttaataaagaaatggtcaaaaaacatgactagtagatgcgaagttattgatgtgtaaa |
9941738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 9335203 - 9335252
Alignment:
| Q |
25 |
cttaaagcttgactcataacatctattgcaggcccctgcgcattacttcc |
74 |
Q |
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| T |
9335203 |
cttaaagcttgactcataacatctattgcaggcccctgcgcattgcttcc |
9335252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 42363174 - 42363334
Alignment:
| Q |
19 |
ccaaaccttaaagcttgactcataacatctattgcaggcccctgcgcattacttcctctgtactttattgctttctccattgcatcctaaaattaccaaa |
118 |
Q |
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| T |
42363174 |
ccaaaccttaaagcttgaaacataacatctattgcaggcaccactgctttagcaactttgttctttatcgctttctccattgcatcctaaaattaccaag |
42363273 |
T |
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| Q |
119 |
atcctaaataaagaaagggtgaaaaacatgactagtagatgtgaaggtattggtgtgtaaa |
179 |
Q |
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| T |
42363274 |
agccttaataatgaaaggacgaaaagcatgactagtagatgtgaagttattggtatgtaaa |
42363334 |
T |
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