View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17976_high_2 (Length: 220)
Name: NF17976_high_2
Description: NF17976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17976_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 191
Target Start/End: Original strand, 3523823 - 3523931
Alignment:
| Q |
83 |
acataccaatcaacatgttataagagagcatggattggatgttatggtggaaagccatgtttgatttcgtgacaaaaagaaatggagaaaattttgttta |
182 |
Q |
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| T |
3523823 |
acataccaatcaacatgttataagagagcatggatgggatgttatggtggaaagccatgtttgatttcatgacaaaaagaaaaggagaagagtttgttta |
3523922 |
T |
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| Q |
183 |
cggtgcatt |
191 |
Q |
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|||| |||| |
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| T |
3523923 |
cggttcatt |
3523931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 36153728 - 36153669
Alignment:
| Q |
81 |
atacataccaatcaacatgttataagagagcatggattggatgttatggtggaaagccat |
140 |
Q |
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| T |
36153728 |
atacataccaatcaacatgttgtaagagagcatcgcctggatgttatggtggaaagccat |
36153669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 16796995 - 16796934
Alignment:
| Q |
81 |
atacataccaatcaacatgttataagagagcatggattggatgttatggtggaaagccatgt |
142 |
Q |
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| T |
16796995 |
atacataccaatcaacatgttgtaagagagcatcgccacgttgttatggtggaaagccatgt |
16796934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 34453509 - 34453477
Alignment:
| Q |
81 |
atacataccaatcaacatgttataagagagcat |
113 |
Q |
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| T |
34453509 |
atacataccaatcaacatgttgtaagagagcat |
34453477 |
T |
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