View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17976_low_1 (Length: 546)
Name: NF17976_low_1
Description: NF17976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17976_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 531
Target Start/End: Complemental strand, 4784171 - 4783654
Alignment:
| Q |
19 |
gagtacttggttgggataccataagtacttgaagagagacataagaatatagtgaagatgataatgaggagaaatgggtttgatgtgagcgacatcatca |
118 |
Q |
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| T |
4784171 |
gagtacttggttgggataccataagtacttgaagagagacataagaatatagtgaagatgataatgaggagaaatgggtttgatgtgagcgacatcatca |
4784072 |
T |
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| Q |
119 |
aagtttgattaaaaccaactgatttgtagtagnnnnnnnnnnnnngtaaaagatttggagtggttaacaaaacgtagtatagaaaa-tgtgttttcctgg |
217 |
Q |
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| T |
4784071 |
aagtttgattaaaaccaactgatttggagtagttttttttt----gtaaaagatttggagtggttaacaaaacgtagtatagaaaaatgtgttttcctgg |
4783976 |
T |
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| Q |
218 |
tattaccatgtatttatagtgaatgaattggcaaaacaattggtggtcaaattcaataataatcattaaaacaacaatatatacataatatatacnnnnn |
317 |
Q |
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| T |
4783975 |
tattaccatgtatttatagtgaatgaattggcaaaacaattggtggtcaaatttaataataatcattaaaacaacaatatatacataatatattcttttt |
4783876 |
T |
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| Q |
318 |
nnnggtcaaatatatatctactttcaatattctatataaggtagagttttattatgggagactagaccatattttaagtttaattagttttattgctcag |
417 |
Q |
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| T |
4783875 |
tttggtcaaatatatatctactttcaatattctatataaggtagagttttattatgggagactagaccatattttaagt----ttagttttattgctcag |
4783780 |
T |
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| Q |
418 |
cttctagagacag------------nnnnnnnngttttagtgtttcttcaatttatatatttgtgatttagatgttaccaaagtaaattcattttcaacg |
505 |
Q |
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| T |
4783779 |
cttctagagacagtttttttgtttttttgttttgttttagtgtttcttcaatttatatatttgtgatttagatgttaccaaagtaaattcattttcaacg |
4783680 |
T |
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| Q |
506 |
accatatcttcaattggaaaatttgt |
531 |
Q |
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| T |
4783679 |
accatatcttcaattgaaaaatttgt |
4783654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 4781195 - 4781136
Alignment:
| Q |
18 |
agagtacttggttgggataccataagtacttgaagagagacataagaatatagtgaagat |
77 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||| | | |||||||||| |
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| T |
4781195 |
agagtacttggttgggattccataagtacttgaagggagacataaaattgtagtgaagat |
4781136 |
T |
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