View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17977_high_14 (Length: 238)
Name: NF17977_high_14
Description: NF17977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17977_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 42682746 - 42682919
Alignment:
| Q |
18 |
tcaatttctgtcttaacatatacattatctgtcctagaaaacaaacaagaaaaacctagtnnnnnnnctcgtcagttttctttttcatcacattctttcg |
117 |
Q |
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| T |
42682746 |
tcaatttctgtcttaacatatacattacctgtcctagaaaacaaacaagaaaaacctagtaaaaaaactcgtcagttttctttttcatcacattctttcg |
42682845 |
T |
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| Q |
118 |
tatcaatacacaattttatttcaccatcatcaagaatggaacaagccaacccagggattaaggacatggattat |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42682846 |
tatcaatacacaattttatttcaccatcatcaagaatggaacaagccaacccagggattaagaacatggattat |
42682919 |
T |
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