View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17977_high_16 (Length: 231)
Name: NF17977_high_16
Description: NF17977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17977_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 50893922 - 50893729
Alignment:
| Q |
16 |
ttctgaaatgtgctattcaaatattgagacaactcaagatggcacagtagacattcacaatttatgtggcttgtttaccgttttctcgaaacagaaagaa |
115 |
Q |
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| T |
50893922 |
ttctgaaatgtgctattcaaatattgagacagctcaagatggcacagtagacattcacattttatgtggcttgtttaccgttttctcgaaacagaaagaa |
50893823 |
T |
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| Q |
116 |
agaagaagaaatagtgaaataggcagatattctgagagagacatgtcaccgtcgtttgcttgctcacgcaaaatgcaccggcgtcctcgacgccatcc |
213 |
Q |
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|||||||||||| |||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
50893822 |
agaagaagaaatcgtgaaataggcacatattct----gagacatgtcaccgtcgtttgcctgctcacgcaaaatgcaccggcgtcctcgacgccatcc |
50893729 |
T |
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