View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17977_high_8 (Length: 305)
Name: NF17977_high_8
Description: NF17977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17977_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 287
Target Start/End: Original strand, 35478807 - 35479079
Alignment:
| Q |
15 |
aattggtgggatatttaggagagcaatgacagacatcaatatcaaaggtatagtatgtattatcatgacaaaaacataatttaaaatcaaaacatttatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35478807 |
aattggtgggatatttaggagagcaatgacagacatcaatatcaaaggtatagtatacattatcatgacaaaaacataatttaaaatcaaaacatttatt |
35478906 |
T |
|
| Q |
115 |
ttgaattttaatttttgacttgtaatacaggctacactattccaaaggggtggaaagtctttgcatcatttcgtgccgtacatctaaaccccgatcattt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35478907 |
ttgaattttaatttttgacttgtaatacaggctacactattccaaaggggtggaaagtctttgcatcatttcgtgccgtacatctaaaccccgatcattt |
35479006 |
T |
|
| Q |
215 |
caaagatgcgcgcaccttcaatccatggagatggcaggtagcactctcattttatctttataggtgacgagac |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35479007 |
caaagatgcgcgcaccttcaatccatggagatggcaggtagcactctcattttatctttataggtgacgagac |
35479079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 31557178 - 31557257
Alignment:
| Q |
175 |
ttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaatccatggagatggcaggta |
254 |
Q |
| |
|
|||||||||||||||| || ||| | || || || |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31557178 |
ttgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcaccttcaatccatggagatggcaggta |
31557257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University