View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17977_low_1 (Length: 519)
Name: NF17977_low_1
Description: NF17977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17977_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 41448823 - 41449355
Alignment:
| Q |
1 |
aaatctataaggggctttggttaaggtatttgttgatgggggaacaaccctaagagcatgaggcggatgcggtggatcaggagatgggcactcccaagga |
100 |
Q |
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| T |
41448823 |
aaatctataagtggctttggttaaggtatttgttgatgggggaacaaccctaagagcatgaggcggatgccgtggatcaggtgatgggcactcccaagga |
41448922 |
T |
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| Q |
101 |
----attt------------tttccgggaagagatgctatggaggagggatttggctagttgtgggcatgagtttcatgatcatgagtgttggcttgata |
184 |
Q |
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| T |
41448923 |
gaaaattaaaggtcgagacattgaggggaagagatgatatggaggagggttttggctagttgtgggcatgagtttcatgatcatgagtgttggcttgata |
41449022 |
T |
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| Q |
185 |
atggcaagatgaaagctgagatggagagaaagtcattgggctaaacttggtgaaggaagcccgtaaggacataaggcagttcacaaacagtttatttata |
284 |
Q |
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| T |
41449023 |
atggcaagaggaaagctgagatggagagaaagtcattgggctaaacttggtgaaggaagcccgtaaggacataacgcagttcacaaacagtttatttata |
41449122 |
T |
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| Q |
285 |
gtgaatatgcaattatctatgttccgcaaattttcaaagtggaacttgtggggg---agtagtagttccacaagtctaaactttacctctttctcaaaga |
381 |
Q |
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| T |
41449123 |
gtgaatatgcaattatctatgttccgcaaattttcaaagtggaacttgtgggggagtagtagtagttccacaagtctaaattttacctctttctcaaaga |
41449222 |
T |
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| Q |
382 |
tgaaattttaggactggtttattaaaacgattcaaa-atataattcacgctattacaaccattgaggatggaatttggtttgccagaaacgataaagttt |
480 |
Q |
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||||||||||||||| |||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41449223 |
tgaaattttaggacttgtttattaaaacgattcaaagaaataattcacgttattacaaccattgaggatggaatttggtttgccagaaacgataaagttt |
41449322 |
T |
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| Q |
481 |
ctgatcaatgatacaaataatcggagaaattag |
513 |
Q |
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| T |
41449323 |
ctgatcaatgatacaaataatcagagaaattag |
41449355 |
T |
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