View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17977_low_10 (Length: 268)

Name: NF17977_low_10
Description: NF17977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17977_low_10
NF17977_low_10
[»] chr8 (7 HSPs)
chr8 (19-260)||(5886861-5887102)
chr8 (19-107)||(5849273-5849361)
chr8 (19-107)||(5842563-5842651)
chr8 (19-107)||(5948210-5948298)
chr8 (21-107)||(5983825-5983911)
chr8 (21-107)||(5920641-5920727)
chr8 (21-107)||(5959307-5959393)
[»] chr2 (1 HSPs)
chr2 (21-82)||(42788750-42788811)
[»] chr3 (1 HSPs)
chr3 (30-76)||(34626445-34626491)
[»] chr1 (1 HSPs)
chr1 (30-76)||(51044689-51044735)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 5886861 - 5887102
Alignment:
Q  19 ttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtgcaaagtccaaacagt 118  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5886861 ttttcttcatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtccaaagtccaaacagt 5886960  T
Q  119 tcaaatcttgttgagggaaaaataagtagaccgtcccttcccttttaaaataagtgtcattttatcattaaatttaaagggaaaaatttaagatccaatt 218  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5886961 tcaaatcttgttgagggaaaaatgagtagaccgtcccttccgttttaaaataagtgtcattttatcattaaatttaaagggaaaaatttaagatccaatt 5887060  T
Q  219 gaaaaagagagacacttatttgaaaccggaaagagtataatc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5887061 gaaaaagagagacacttatttgaaaccggaaagagtataatc 5887102  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 5849273 - 5849361
Alignment:
Q  19 ttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtgcaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||||    
T  5849273 ttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggcaagtgcttggtaatttgtgcccatctgtccaaa 5849361  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 5842563 - 5842651
Alignment:
Q  19 ttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtgcaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||||||| ||||    
T  5842563 ttttctttatgcttgaattccaaaagtttttcacctcattatcggttcttcctggcaagtacttggcaatttgtgcccatctgtccaaa 5842651  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 5948210 - 5948298
Alignment:
Q  19 ttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtgcaaa 107  Q
    ||||||||||| ||||||||||||||||||| | ||||||||| |||||||| ||||||||||| |||||||| |||||||||| ||||    
T  5948210 ttttctttatggttgaattccaaaagttttttatctcattatctgttcttccaggtaagtgctttgcaatttgagcccatctgtccaaa 5948298  T

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Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 5983825 - 5983911
Alignment:
Q  21 ttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtgcaaa 107  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| || |||||||||| ||||    
T  5983825 ttctttatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgttttgcaatctgagcccatctgtccaaa 5983911  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 5920641 - 5920727
Alignment:
Q  21 ttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtgcaaa 107  Q
    ||||| ||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| || ||||| |||| ||||    
T  5920641 ttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttcgcaatctgagcccacctgtccaaa 5920727  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 5959307 - 5959393
Alignment:
Q  21 ttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtgcaaa 107  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||| | |||||| || ||||| || |||||||||| ||||    
T  5959307 ttctttatggtagaattccaaaagtttttcacctcattatctgttcttccagttaagtgttttgcaatctgagcccatctgtccaaa 5959393  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 42788750 - 42788811
Alignment:
Q  21 ttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgctt 82  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||    
T  42788750 ttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctt 42788811  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 34626445 - 34626491
Alignment:
Q  30 cttgaattccaaaagtttttcacctcattatccgttcttcctggtaa 76  Q
    |||||||||||||||||||| | ||||||||||||||| ||||||||    
T  34626445 cttgaattccaaaagtttttaatctcattatccgttctacctggtaa 34626491  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 51044735 - 51044689
Alignment:
Q  30 cttgaattccaaaagtttttcacctcattatccgttcttcctggtaa 76  Q
    |||||||||||||||||||| | ||||||||| ||||| ||||||||    
T  51044735 cttgaattccaaaagttttttatctcattatctgttctccctggtaa 51044689  T

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