View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17977_low_12 (Length: 249)
Name: NF17977_low_12
Description: NF17977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17977_low_12 |
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| [»] scaffold0400 (1 HSPs) |
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| [»] scaffold0365 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 15012551 - 15012328
Alignment:
| Q |
12 |
agagaagcatatttggtgaaaacaacatttaggctatatatacgagacaatatatatttgaagatgattatgacgttacaaattgcctgcagacctgctc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
15012551 |
agagaagcatatttggtgaaaacaacatttaggctatatatatgagacaatatatatttgaagatgattatgacattacaaactgcctgcagacctgctc |
15012452 |
T |
|
| Q |
112 |
catggtagggcgagaacgcgggctttcagttaagcaaacaactgcaatccttatcatcgatgccacctcttgaacaatggtttttgtgggatgagggaga |
211 |
Q |
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|||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15012451 |
catggtagggcgagaaagcgggctttctgttaagcaagcaactgcaatccttatcatcgatgccacctcttgaacaatggtttttgtgggatgagggaga |
15012352 |
T |
|
| Q |
212 |
cgctggtccaacttatctatcaat |
235 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
15012351 |
cgctggtccaacttatctatcaat |
15012328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 15038557 - 15038338
Alignment:
| Q |
16 |
aagcatatttggtgaaaacaacatttaggctatatatacgagacaatatatatttgaagatgattatgacgttacaaattgcctgcagacctgctccatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
15038557 |
aagcatatttggtgaaaacaacatttaggctatatatacgagacaatatatatttgaagatgattatgacattacaaactgcctgcagacctgctccatg |
15038458 |
T |
|
| Q |
116 |
gtagggcgagaacgcgggctttcagttaagcaaacaactgcaatccttatcatcgatgccacctcttgaacaatggtttttgtgggatgagggagacgct |
215 |
Q |
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| T |
15038457 |
gtagggcgagaaatcgggctttcagttaagcaagcaactgcaatccttatcatcgatgccacttcttgaacaatggtatttgtaggatgagggagacgtt |
15038358 |
T |
|
| Q |
216 |
ggtccaacttatctatcaat |
235 |
Q |
| |
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|||| ||||||||||||||| |
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| T |
15038357 |
ggtctaacttatctatcaat |
15038338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 15003660 - 15003440
Alignment:
| Q |
15 |
gaagcatatttggtgaaaacaacatttaggctatatatacgagacaatatatatttgaagatgattatgacgttacaaattgcctgcagacctgctccat |
114 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| || |||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||||| |
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| T |
15003660 |
gaagcatatttggtgaaaacaacattcaggctatatgtatgagacactatatatttgaagatgattatgacattaaaaactgcctgcagacctgctccat |
15003561 |
T |
|
| Q |
115 |
ggtagggcgagaacgcgggctttcagttaagcaaacaactgcaatccttatcatcgatgccacctcttgaacaatggtttttgtgggatgagggagacgc |
214 |
Q |
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|||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15003560 |
agtagggcgagaatgtgggctttcagttaagcaagcaactgcaatccttatcatcgatgccacctcttgaacaatggtttttgtgggatgagggagacgc |
15003461 |
T |
|
| Q |
215 |
tggtccaacttatctatcaat |
235 |
Q |
| |
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||||||||||||||||||||| |
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| T |
15003460 |
tggtccaacttatctatcaat |
15003440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 47 - 237
Target Start/End: Complemental strand, 15033947 - 15033757
Alignment:
| Q |
47 |
atatatacgagacaatatatatttgaagatgattatgacgttacaaattgcctgcagacctgctccatggtagggcgagaacgcgggctttcagttaagc |
146 |
Q |
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||||||| |||||||||| ||| |||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15033947 |
atatatatgagacaatatgtatctgaagatgattatgacattacaaactgtctgcagacctgctccatggtagggcgagaacgcgggctttcagttaagc |
15033848 |
T |
|
| Q |
147 |
aaacaactgcaatccttatcatcgatgccacctcttgaacaatggtttttgtgggatgagggagacgctggtccaacttatctatcaattg |
237 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15033847 |
aagcaactgcaatccttatcatcgatgccacttcttgaacaatggtatttgtgggatgagggacacgctggtccaacttatctatcaattg |
15033757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 68 - 235
Target Start/End: Complemental strand, 15042069 - 15041899
Alignment:
| Q |
68 |
tttgaagatgattatgacgttacaaattgcctgcagacctgctccatggtagggcgagaacgcgggctttcagttaagcaaacaactgcaatccttatca |
167 |
Q |
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||||||||| |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15042069 |
tttgaagataattatgacattacaaactgcttgcagacctgctccatggtagggcgagaacgcgggctttcagttaagcaagcaactgcaatccttatca |
15041970 |
T |
|
| Q |
168 |
tcgatgccacctcttgaacaatggt---ttttgtgggatgagggagacgctggtccaacttatctatcaat |
235 |
Q |
| |
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|||||||||||| ||||||||| | ||||| ||| |||||||||| ||||| ||| |||| |||||| |
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| T |
15041969 |
tcgatgccaccttgtgaacaatgatgtcatttgtaggacgagggagacgttggtctaacatatccatcaat |
15041899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 68 - 235
Target Start/End: Original strand, 14531350 - 14531517
Alignment:
| Q |
68 |
tttgaagatgattatgacgttacaaattgcctgcagacctgctccatggtagggcgagaacgcgggctttcagttaagcaaacaactgcaatccttatca |
167 |
Q |
| |
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|||||||||||||||||| ||||||| || ||||||| |||||||||||||||||||||||| | ||||| | ||||||| ||||||||||||||| || |
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| T |
14531350 |
tttgaagatgattatgacattacaaactgtttgcagacatgctccatggtagggcgagaacgcagactttctgctaagcaagcaactgcaatccttacca |
14531449 |
T |
|
| Q |
168 |
tcgatgccacctcttgaacaatggtttttgtgggatgagggagacgctggtccaacttatctatcaat |
235 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||| | ||||||||| |
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| T |
14531450 |
cagatgccacctcttgaacaatggtatttgtgggatgagggagacgttggtccaatctctctatcaat |
14531517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 68 - 235
Target Start/End: Original strand, 14521250 - 14521417
Alignment:
| Q |
68 |
tttgaagatgattatgacgttacaaattgcctgcagacctgctccatggtagggcgagaacgcgggctttcagttaagcaaacaactgcaatccttatca |
167 |
Q |
| |
|
|||||| ||||||| ||| |||||| ||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||| || ||||||||||||| |
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|
| T |
14521250 |
tttgaatatgattaagacattacaagctgcttgcagacctgctccatggtagggcgagaacgtggggtttcagtcaagcaagcagttgcaatccttatcg |
14521349 |
T |
|
| Q |
168 |
tcgatgccacctcttgaacaatggtttttgtgggatgagggagacgctggtccaacttatctatcaat |
235 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||| |||||||||| || ||||||||||| |||||| |
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| T |
14521350 |
tcgatgccacctcttgaacaatggtatctgttggacgagggagacgttgatccaacttatccatcaat |
14521417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 14521180 - 14521233
Alignment:
| Q |
15 |
gaagcatatttggtgaaaacaacatttaggctatatatacgagacaatatatat |
68 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
14521180 |
gaagcatatttggtaaaaacaacattctggctatatatatgagacaatatatat |
14521233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 14337 - 14109
Alignment:
| Q |
19 |
catatttggtgaaaacaacatttaggctatatatacgagacaatatata------------tttgaagatgattatgacgttacaaattgcctgcagacc |
106 |
Q |
| |
|
||||||| || || |||| |||||||||||||||| ||||||||||||| |||||| ||| |||||| |||||| ||| |||||||| |
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|
| T |
14337 |
catattttgtaaacacaatatttaggctatatatatgagacaatatatatgtaactgaccctttgaacatggctatgacattacaagctgcttgcagacc |
14238 |
T |
|
| Q |
107 |
tgctccatggtagggcgagaacgcgggctttcagttaagcaaacaactgcaatccttatcatcgatgccacctcttgaacaatggtttttgtgggatgag |
206 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| |||| ||||||||||||||| || || | |||||||||||||||||| ||||||||||||| |
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|
| T |
14237 |
tgctccatggtagggcgagaacacgggctttttgttatgcaagcaactgcaatccttagcacagaagacacctcttgaacaatggtatttgtgggatgag |
14138 |
T |
|
| Q |
207 |
ggagacgctggtccaacttatctatcaat |
235 |
Q |
| |
|
||||||| |||||||| |||||||||||| |
|
|
| T |
14137 |
ggagacgttggtccaatttatctatcaat |
14109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 14980 - 14752
Alignment:
| Q |
19 |
catatttggtgaaaacaacatttaggctatatatacgagacaatatata------------tttgaagatgattatgacgttacaaattgcctgcagacc |
106 |
Q |
| |
|
||||||| || || |||| |||||||||||||||| ||||||||||||| |||||| ||| |||||| |||||| ||| |||||||| |
|
|
| T |
14980 |
catattttgtaaacacaatatttaggctatatatatgagacaatatatatgtaactgaccctttgaacatggctatgacattacaagctgcttgcagacc |
14881 |
T |
|
| Q |
107 |
tgctccatggtagggcgagaacgcgggctttcagttaagcaaacaactgcaatccttatcatcgatgccacctcttgaacaatggtttttgtgggatgag |
206 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| |||| ||||||||||||||| || || | |||||||||||||||||| ||||||||||||| |
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|
| T |
14880 |
tgctccatggtagggcgagaacacgggctttttgttatgcaagcaactgcaatccttagcacagaagacacctcttgaacaatggtatttgtgggatgag |
14781 |
T |
|
| Q |
207 |
ggagacgctggtccaacttatctatcaat |
235 |
Q |
| |
|
||||||| |||||||| |||||||||||| |
|
|
| T |
14780 |
ggagacgttggtccaatttatctatcaat |
14752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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