View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17977_low_18 (Length: 226)
Name: NF17977_low_18
Description: NF17977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17977_low_18 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 5887305 - 5887080
Alignment:
| Q |
1 |
agagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacagcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5887305 |
agagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacat |
5887206 |
T |
|
| Q |
101 |
tctaggcaataggtatatccattacaatagctctttttcttttcctccgatgtgcttttcatgtcaatctttacaatttattattctcaaagttcaaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5887205 |
tctaggcaataggtatatccattacaatagctctttttcttttcctccgatgtgcttttcatgtcaatctttacaatttattattctcaaagttcaaaag |
5887106 |
T |
|
| Q |
201 |
gttgattatactctttccggtttcaa |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
5887105 |
gttgattatactctttccggtttcaa |
5887080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 5843164 - 5842966
Alignment:
| Q |
3 |
agttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacagcattc |
102 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||| |
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| T |
5843164 |
agttgtagattaagatggataaattatctaagacctgatttaaaacgtggaagtttctcttatgaagaagtagcaatcattatagaactacacagcattc |
5843065 |
T |
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| Q |
103 |
taggcaataggtatatccattacaatagctctttttcttttcctccgatgtgcttttcatgtcaatctttacaatttattattctcaaagttcaaaagg |
201 |
Q |
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| T |
5843064 |
taggcaataggtatatccattacaatagctcttcttcttttcctccaatgttattttcatgtcaatcattaccatttattattctcaaagttcaaaagg |
5842966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 5849906 - 5849708
Alignment:
| Q |
3 |
agttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacagcattc |
102 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||| |
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| T |
5849906 |
agttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctcttatgaagaagtagcaatcattatagaactacacagcattc |
5849807 |
T |
|
| Q |
103 |
taggcaataggtatatccattacaatagctctttttcttttcctccgatgtgcttttcatgtcaatctttacaatttattattctcaaagttcaaaagg |
201 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||| |||| |||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
5849806 |
taggcaataggtatatccattacaattgctcttcttcttttcctccaatgttattttcatgtcaatcattaccatttattattctcaaagttcaaaagg |
5849708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 5984697 - 5984557
Alignment:
| Q |
1 |
agagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacagcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5984697 |
agagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacat |
5984598 |
T |
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| Q |
101 |
tctaggcaataggtatatccattacaatagctctttttctt |
141 |
Q |
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|||||||||||||||||| ||||||| ||||||| |||||| |
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| T |
5984597 |
tctaggcaataggtatattcattacattagctctctttctt |
5984557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 5949169 - 5949029
Alignment:
| Q |
1 |
agagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacagcat |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5949169 |
agagttgaagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacat |
5949070 |
T |
|
| Q |
101 |
tctaggcaataggtatatccattacaatagctctttttctt |
141 |
Q |
| |
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|||||||||||||||||| ||||||| ||||||| |||||| |
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| T |
5949069 |
tctaggcaataggtatattcattacattagctctctttctt |
5949029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 5960434 - 5960298
Alignment:
| Q |
1 |
agagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacagcat |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| |
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| T |
5960434 |
agagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcaacaagaagtagcactcattgtagaactccacaacat |
5960335 |
T |
|
| Q |
101 |
tctaggcaataggtatatccattacaatagctctttt |
137 |
Q |
| |
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| |||||||||||||||| ||||||| |||||||||| |
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| T |
5960334 |
tttaggcaataggtatattcattacattagctctttt |
5960298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 5921277 - 5921152
Alignment:
| Q |
1 |
agagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacagcat |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |
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| T |
5921277 |
agagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagctgcactcattctagaactccacagcat |
5921178 |
T |
|
| Q |
101 |
tctaggcaataggtatatccattaca |
126 |
Q |
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|||||||||||||||||| ||||||| |
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| T |
5921177 |
tctaggcaataggtatattcattaca |
5921152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 42789045 - 42788930
Alignment:
| Q |
3 |
agttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacagcattc |
102 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||| || || ||| | ||||| || | ||||| |
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| T |
42789045 |
agttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttattattgaacttcataccattc |
42788946 |
T |
|
| Q |
103 |
taggcaataggtatat |
118 |
Q |
| |
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|||| || |||||||| |
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| T |
42788945 |
taggaaacaggtatat |
42788930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45676125 - 45676080
Alignment:
| Q |
1 |
agagttgcagattaagatggataaattatctaagacctgatttgaa |
46 |
Q |
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||||||| ||||| |||||||||||||||||||| ||||||||||| |
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| T |
45676125 |
agagttgtagattgagatggataaattatctaaggcctgatttgaa |
45676080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44674049 - 44674089
Alignment:
| Q |
1 |
agagttgcagattaagatggataaattatctaagacctgat |
41 |
Q |
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||||||||||||| |||||||||||||| |||||||||||| |
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| T |
44674049 |
agagttgcagattgagatggataaattacctaagacctgat |
44674089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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