View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17977_low_19 (Length: 225)

Name: NF17977_low_19
Description: NF17977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17977_low_19
NF17977_low_19
[»] chr3 (8 HSPs)
chr3 (18-107)||(15686714-15686803)
chr3 (19-108)||(24699339-24699428)
chr3 (12-107)||(29614858-29614954)
chr3 (18-97)||(27304682-27304761)
chr3 (18-70)||(4765960-4766012)
chr3 (19-106)||(14132343-14132430)
chr3 (18-70)||(4832797-4832849)
chr3 (18-70)||(16244360-16244412)
[»] chr2 (11 HSPs)
chr2 (18-96)||(18929103-18929181)
chr2 (18-106)||(26650696-26650783)
chr2 (21-97)||(29891564-29891640)
chr2 (19-63)||(31404342-31404386)
chr2 (18-70)||(25520678-25520730)
chr2 (19-70)||(17162254-17162305)
chr2 (18-97)||(20489593-20489672)
chr2 (19-70)||(23388930-23388981)
chr2 (44-107)||(24543641-24543704)
chr2 (21-70)||(20515802-20515851)
chr2 (113-145)||(21653934-21653966)
[»] chr7 (8 HSPs)
chr7 (18-97)||(14987350-14987429)
chr7 (18-97)||(15416961-15417040)
chr7 (25-96)||(2546778-2546849)
chr7 (18-85)||(20145689-20145756)
chr7 (30-97)||(18151863-18151930)
chr7 (18-106)||(31443537-31443626)
chr7 (46-97)||(2545488-2545539)
chr7 (19-76)||(18046260-18046317)
[»] chr8 (8 HSPs)
chr8 (27-97)||(10660828-10660898)
chr8 (18-74)||(26136370-26136426)
chr8 (18-107)||(12669074-12669163)
chr8 (19-71)||(19709738-19709790)
chr8 (18-74)||(23540499-23540555)
chr8 (19-85)||(13109988-13110054)
chr8 (21-107)||(24681046-24681132)
chr8 (21-97)||(22713908-22713984)
[»] chr5 (9 HSPs)
chr5 (18-94)||(17167563-17167639)
chr5 (19-96)||(23379475-23379552)
chr5 (18-74)||(23210368-23210424)
chr5 (18-107)||(19218222-19218311)
chr5 (18-106)||(19924265-19924353)
chr5 (19-108)||(28619498-28619586)
chr5 (18-106)||(19926992-19927080)
chr5 (19-107)||(24878129-24878217)
chr5 (24-68)||(25951125-25951169)
[»] scaffold0016 (1 HSPs)
scaffold0016 (19-96)||(12913-12990)
[»] scaffold0264 (1 HSPs)
scaffold0264 (18-70)||(20684-20736)
[»] chr1 (5 HSPs)
chr1 (18-85)||(33102828-33102895)
chr1 (18-97)||(36571965-36572044)
chr1 (19-76)||(17615063-17615120)
chr1 (18-107)||(22608132-22608221)
chr1 (19-70)||(25018448-25018499)
[»] scaffold0337 (1 HSPs)
scaffold0337 (21-106)||(4321-4406)
[»] scaffold0555 (1 HSPs)
scaffold0555 (18-74)||(5946-6002)
[»] chr6 (3 HSPs)
chr6 (18-106)||(17948162-17948250)
chr6 (18-97)||(14767090-14767169)
chr6 (25-82)||(31126436-31126493)
[»] scaffold0024 (1 HSPs)
scaffold0024 (15-106)||(39164-39255)
[»] scaffold0002 (1 HSPs)
scaffold0002 (21-76)||(376452-376507)
[»] chr4 (1 HSPs)
chr4 (18-76)||(4732417-4732475)


Alignment Details
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 15686803 - 15686714
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacacgggtgaacaa 107  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  15686803 atgcacaacatgtcctaggatctctgatttggtcctgctcgtaataatcaaaatcagcccgtattgttcgccaaaaacaccagtgaacaa 15686714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 24699339 - 24699428
Alignment:
Q  19 tgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacacgggtgaacaag 108  Q
    ||||||||||||| |||||| | ||||||| |||||||||||||||| |||| || || ||||||||  ||||| |||| ||| ||||||    
T  24699339 tgcacaacatgtcttaggatatctggtttgctcctgctcgtaataataaaaaccatcccgtattgtttaccaaacacaccggtaaacaag 24699428  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 29614858 - 29614954
Alignment:
Q  12 aagaatatgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgta-ttgttcgccaaaaacacgggtgaacaa 107  Q
    ||||| |||||||||||||  |||||| ||||||||||||||||| || |||||||||| ||| | ||| |||||  |||||||||| ||| |||||    
T  29614858 aagaaaatgcacaacatgttttaggatatttggtttggtcctgcttgttataatcaaaagcagtcagtatttgtttaccaaaaacaccggtaaacaa 29614954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 27304682 - 27304761
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacac 97  Q
    |||||||||||||| |||||| ||||||||| ||||||| | ||||||||| |||||||  |||| ||  ||||||||||    
T  27304682 atgcacaacatgtcataggatttttggtttgatcctgcttgcaataatcaatatcagcccttattatttaccaaaaacac 27304761  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 4765960 - 4766012
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaa 70  Q
    ||||||||||||||||||||| | ||||||| ||||||| ||||||| |||||    
T  4765960 atgcacaacatgtcctaggatttctggtttgttcctgcttgtaataaccaaaa 4766012  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 14132343 - 14132430
Alignment:
Q  19 tgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacacgggtgaaca 106  Q
    ||||||||||||||| |||| | | ||||| ||||||| ||||||| ||||| |||||| | |||||  |||||||||| ||| ||||    
T  14132343 tgcacaacatgtccttggatttctagtttgatcctgcttgtaataaccaaaaccagcctttcttgtttaccaaaaacaccggtaaaca 14132430  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 4832797 - 4832849
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaa 70  Q
    |||||||||||||||| |||| ||||||||| |||| || ||||||| |||||    
T  4832797 atgcacaacatgtcctgggatttttggtttgatcctacttgtaataaccaaaa 4832849  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 16244360 - 16244412
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaa 70  Q
    ||||||||||| ||||||||||  ||||||||||||||| |  ||||||||||    
T  16244360 atgcacaacatatcctaggatccctggtttggtcctgcttggtataatcaaaa 16244412  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 18929181 - 18929103
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaaca 96  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||  |||||||||    
T  18929181 atgcacaacatgtcctaggatctctggtttggtcctgctcgtaataatcaaaaccagcccgtattgtttaccaaaaaca 18929103  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 26650783 - 26650696
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacacgggtgaaca 106  Q
    ||||||||||||||||||||||| ||||| |||| ||||| |||||||||||| ||||| ||||||||  |||||||||| ||| ||||    
T  26650783 atgcacaacatgtcctaggatctctggtt-ggtcatgctcataataatcaaaaccagcccgtattgtttaccaaaaacaccggtaaaca 26650696  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 29891564 - 29891640
Alignment:
Q  21 cacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacac 97  Q
    |||||||||||||||||| | ||||||| ||||||| ||||||| ||||| || ||| |  ||||||||||||||||    
T  29891564 cacaacatgtcctaggatttatggtttgatcctgcttgtaataaccaaaaccaacctttcctgttcgccaaaaacac 29891640  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 31404342 - 31404386
Alignment:
Q  19 tgcacaacatgtcctaggatctttggtttggtcctgctcgtaata 63  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||    
T  31404342 tgcacaacatgtcctaggatttttggtttggtcctgcttgtaata 31404386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 25520678 - 25520730
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaa 70  Q
    ||||||||||||||||||||| || |||||| ||||||| ||||||| |||||    
T  25520678 atgcacaacatgtcctaggattttgggtttgatcctgcttgtaataaccaaaa 25520730  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 17162254 - 17162305
Alignment:
Q  19 tgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaa 70  Q
    ||||||||||||| |||||| | ||||||| ||||||| |||||||||||||    
T  17162254 tgcacaacatgtcataggatttctggtttgatcctgcttgtaataatcaaaa 17162305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 20489593 - 20489672
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacac 97  Q
    ||||| ||||||| ||||||||| |||||||||| | || |||||||||||||  | || ||||||||  ||||||||||    
T  20489593 atgcataacatgttctaggatctctggtttggtctttcttgtaataatcaaaactatcccgtattgtttaccaaaaacac 20489672  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 23388981 - 23388930
Alignment:
Q  19 tgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaa 70  Q
    |||||||||||||||||||| | ||||||| || |||| |||||||||||||    
T  23388981 tgcacaacatgtcctaggatttctggtttgatcatgcttgtaataatcaaaa 23388930  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 24543704 - 24543641
Alignment:
Q  44 gtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacacgggtgaacaa 107  Q
    ||||| || |||| ||||||||||||||||||| ||||||||  |||||||||| ||| |||||    
T  24543704 gtttgatcatgcttgtaataatcaaaatcagcccgtattgtttaccaaaaacaccggtaaacaa 24543641  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 20515802 - 20515851
Alignment:
Q  21 cacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaa 70  Q
    |||||||||||||| ||| | ||||||| ||||||| |||||||||||||    
T  20515802 cacaacatgtcctaagatttctggtttgatcctgcttgtaataatcaaaa 20515851  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 21653934 - 21653966
Alignment:
Q  113 caaacacatcaaaagaaacacttagaggtgtcc 145  Q
    ||||||||||||||| |||||||||||||||||    
T  21653934 caaacacatcaaaaggaacacttagaggtgtcc 21653966  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 14987350 - 14987429
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacac 97  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || || ||||||||  ||||||||||    
T  14987350 atgcacaacatgtcctaggatctctggtttggtactgctcgtaataatcaaaaccaacccgtattgtttaccaaaaacac 14987429  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 15416961 - 15417040
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacac 97  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || || ||||||||  ||||||||||    
T  15416961 atgcacaacatgtcctaggatctctggtttggtactgctcgtaataatcaaaaccaacccgtattgtttaccaaaaacac 15417040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 2546849 - 2546778
Alignment:
Q  25 acatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaaca 96  Q
    ||||| |||| ||||| |||||||||||||||||||||||||||||||||||  |||||||  |||||||||    
T  2546849 acatgccctacgatctatggtttggtcctgctcgtaataatcaaaatcagcccatattgtttaccaaaaaca 2546778  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 20145756 - 20145689
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgtt 85  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||  |||||||    
T  20145756 atgcataacatatcctaggatctctggtttggtcctgctcgtaataatcaaaaccagcccatattgtt 20145689  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 18151863 - 18151930
Alignment:
Q  30 tcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacac 97  Q
    ||||| ||||| |||||||||| |||| ||||||||||||||||||| ||||||||  ||||||||||    
T  18151863 tcctaagatctctggtttggtcatgcttgtaataatcaaaatcagcccgtattgtttaccaaaaacac 18151930  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 31443537 - 31443626
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgta-ttgttcgccaaaaacacgggtgaaca 106  Q
    ||||||||||||||||||||||| || ||||||||| || || |||||||||| ||| | ||| |||||  |||||||||| ||| ||||    
T  31443537 atgcacaacatgtcctaggatctctgatttggtccttcttgttataatcaaaaccagtcggtatttgtttaccaaaaacaccggtaaaca 31443626  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 2545539 - 2545488
Alignment:
Q  46 ttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacac 97  Q
    |||||| |||||||||||||||||| ||||| ||||||||  ||||||||||    
T  2545539 ttggtcatgctcgtaataatcaaaaccagcccgtattgtttaccaaaaacac 2545488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 18046317 - 18046260
Alignment:
Q  19 tgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcc 76  Q
    ||||||||||||||||| || | | ||||| ||||||| ||||||| |||||||||||    
T  18046317 tgcacaacatgtcctagtatttctagtttgatcctgcttgtaataaccaaaatcagcc 18046260  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 10660898 - 10660828
Alignment:
Q  27 atgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacac 97  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || |  |||||||||||| |||||||    
T  10660898 atgtcctaggatctctggtttggtcctgctcgtaataatcaaaaccaacacgtattgttcgcctaaaacac 10660828  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 26136370 - 26136426
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcag 74  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||    
T  26136370 atgcacaacatgtcctaggatctctggtttggtcctgcttgttataatcaaaatcag 26136426  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 12669074 - 12669163
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacacgggtgaacaa 107  Q
    ||||||||||||| ||| ||| | ||||||| ||||||| ||||||||||||| ||||| ||||||||  |||||||||| ||| |||||    
T  12669074 atgcacaacatgttctatgatttctggtttgatcctgcttgtaataatcaaaaccagcccgtattgtttaccaaaaacaccggtaaacaa 12669163  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 19709738 - 19709790
Alignment:
Q  19 tgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaat 71  Q
    |||||||||||||||||||| | ||||||| ||||||| | ||||||||||||    
T  19709738 tgcacaacatgtcctaggatttatggtttgatcctgcttgcaataatcaaaat 19709790  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 23540499 - 23540555
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcag 74  Q
    ||||||||||||||||||||||| |||||||||||| |  || ||||| ||||||||    
T  23540499 atgcacaacatgtcctaggatctctggtttggtccttcatgttataatgaaaatcag 23540555  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 13110054 - 13109988
Alignment:
Q  19 tgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgtt 85  Q
    |||||||||||||||||||| | ||||||| | || || ||||||| |||||||||||  |||||||    
T  13110054 tgcacaacatgtcctaggatttctggtttgatgctacttgtaataaccaaaatcagcccttattgtt 13109988  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 24681046 - 24681132
Alignment:
Q  21 cacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacacgggtgaacaa 107  Q
    ||||||||||| |||||| | ||||||| | ||||| ||||||||||||| |||||  | |||||  |||||||||| ||| |||||    
T  24681046 cacaacatgtcataggatttctggtttgattctgcttgtaataatcaaaaccagcccttcttgttttccaaaaacaccggtaaacaa 24681132  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 22713908 - 22713984
Alignment:
Q  21 cacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacac 97  Q
    |||||||||| ||||| | | ||||||| ||||||| |||||||| |||| |||||  | ||||| |||||||||||    
T  22713908 cacaacatgttctagggtttctggtttgatcctgcttgtaataataaaaaccagcccttcttgtttgccaaaaacac 22713984  T

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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 17167563 - 17167639
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaa 94  Q
    ||||||||||||||||||||| | ||||||  ||||||| ||||||||||||||||||| ||||||||  |||||||    
T  17167563 atgcacaacatgtcctaggatttatggttttatcctgcttgtaataatcaaaatcagcccgtattgtttaccaaaaa 17167639  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 23379475 - 23379552
Alignment:
Q  19 tgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaaca 96  Q
    ||||||| ||||||||| |||||||||||| |||||||||||||||||||||  |||| ||| ||||  |||||||||    
T  23379475 tgcacaatatgtcctagaatctttggtttgatcctgctcgtaataatcaaaactagcccgtaatgtttaccaaaaaca 23379552  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 23210368 - 23210424
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcag 74  Q
    ||||||||||||||||||||||| |||||| ||||| || || ||||||||||||||    
T  23210368 atgcacaacatgtcctaggatctctggtttcgtccttcttgttataatcaaaatcag 23210424  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 19218222 - 19218311
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacacgggtgaacaa 107  Q
    |||||||||| ||||||  |||| |||||||||||| ||||||||| ||| || || | |||||||||  |||||||||| ||| |||||    
T  19218222 atgcacaacacgtcctataatctctggtttggtcctactcgtaatactcacaaccatcttgtattgtttaccaaaaacaccggtaaacaa 19218311  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 19924265 - 19924353
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacacgggtgaaca 106  Q
    ||||||||||||||||||||| ||| | ||| ||||||| ||||||||  ||| |||||  |||||||  |||||||||| ||| ||||    
T  19924265 atgcacaacatgtcctaggatttttaggttgatcctgcttgtaataattcaaaccagcccatattgtttaccaaaaacacaggtaaaca 19924353  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 28619498 - 28619586
Alignment:
Q  19 tgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacacgggtgaacaag 108  Q
    |||||||||||||||| ||| | ||||||| ||||||| |||||||| ||||  || || | |||||| |||||||||| | ||||||||    
T  28619498 tgcacaacatgtcctatgatttctggtttgatcctgcttgtaataattaaaactagtct-tcttgttcaccaaaaacaccgctgaacaag 28619586  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 19926992 - 19927080
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacacgggtgaaca 106  Q
    ||||||||||||||||||| | ||| | ||| ||||||| ||||||||  ||| |||||  |||||||  |||||||||| ||| ||||    
T  19926992 atgcacaacatgtcctagggtttttagcttgatcctgcttgtaataattcaaaccagcccatattgtttaccaaaaacacaggtaaaca 19927080  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 24878217 - 24878129
Alignment:
Q  19 tgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacacgggtgaacaa 107  Q
    |||||||||||||||||||| | || |||| ||||||| |||||||| |||| || ||| | |||||  ||||||| || ||| |||||    
T  24878217 tgcacaacatgtcctaggatttctgctttgatcctgcttgtaataattaaaaccaacctttcttgtttaccaaaaataccggtaaacaa 24878129  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 25951169 - 25951125
Alignment:
Q  24 aacatgtcctaggatctttggtttggtcctgctcgtaataatcaa 68  Q
    ||||||||||||||||| ||||||| ||||||| || ||||||||    
T  25951169 aacatgtcctaggatctctggtttgatcctgcttgttataatcaa 25951125  T

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Target: scaffold0016 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 12990 - 12913
Alignment:
Q  19 tgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaaca 96  Q
    ||||||| ||||||||| |||||||||||| |||||||||||||||||||||  |||| ||| ||||  |||||||||    
T  12990 tgcacaatatgtcctagaatctttggtttgatcctgctcgtaataatcaaaactagcccgtaatgtttaccaaaaaca 12913  T

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Target: scaffold0264 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 20736 - 20684
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaa 70  Q
    ||||||||||| ||||||||||| ||||||||||||| |||||||||||||||    
T  20736 atgcacaacatatcctaggatctctggtttggtcctgatcgtaataatcaaaa 20684  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 33102895 - 33102828
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgtt 85  Q
    ||||||||||||||||| ||| | ||||||| ||||||| ||||||||||||| ||||  ||||||||    
T  33102895 atgcacaacatgtcctaagatttctggtttgatcctgcttgtaataatcaaaaccagctcgtattgtt 33102828  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 36571965 - 36572044
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacac 97  Q
    |||||||||||||||||| || | ||||||| | ||||| | |||||||||||||||||  |||||||  ||||||||||    
T  36571965 atgcacaacatgtcctagaatttatggtttgattctgcttgcaataatcaaaatcagcccttattgtttaccaaaaacac 36572044  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 17615120 - 17615063
Alignment:
Q  19 tgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcc 76  Q
    |||||||||||||||||||| | ||||||| ||||||| |||||||| |||| |||||    
T  17615120 tgcacaacatgtcctaggatttctggtttgatcctgcttgtaataattaaaaccagcc 17615063  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 22608132 - 22608221
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacacgggtgaacaa 107  Q
    ||||||||||||||||||||| | ||||||| || || | ||||||||| ||| |||| |||||||||  ||| |||||| ||| |||||    
T  22608132 atgcacaacatgtcctaggatttctggtttgatcatgtttgtaataatcgaaaccagcttgtattgtttaccagaaacaccggtaaacaa 22608221  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 25018499 - 25018448
Alignment:
Q  19 tgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaa 70  Q
    |||||||||||||||||||| | ||||||| || |||| |||||||||||||    
T  25018499 tgcacaacatgtcctaggatttctggtttgatcatgcttgtaataatcaaaa 25018448  T

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Target: scaffold0337 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 4406 - 4321
Alignment:
Q  21 cacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacacgggtgaaca 106  Q
    ||||||| |||||||||| | ||||||| ||||||| ||||||||||||| || ||  |||||||  |||||||||| ||| ||||    
T  4406 cacaacacgtcctaggatttctggtttgatcctgcttgtaataatcaaaaccatcccttattgtttaccaaaaacaccggtaaaca 4321  T

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Target: scaffold0555 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 5946 - 6002
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcag 74  Q
    ||||||||||||||||||||||| | ||||| |||| || || ||||||||||||||    
T  5946 atgcacaacatgtcctaggatctctagtttgctccttcttgttataatcaaaatcag 6002  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 17948162 - 17948250
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacacgggtgaaca 106  Q
    ||||||||||||||||||||| | | ||| | | || || ||||||||||||| ||||| ||||||||  |||||||||| ||| ||||    
T  17948162 atgcacaacatgtcctaggatttcttgttggatacttcttgtaataatcaaaaccagcccgtattgtttaccaaaaacactggtaaaca 17948250  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 14767090 - 14767169
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacac 97  Q
    |||||||||||||||||| || | ||||||| || |||| |||||||||||||  ||||  |||||||  ||||||||||    
T  14767090 atgcacaacatgtcctagaatttctggtttgatcgtgcttgtaataatcaaaactagcccttattgtttaccaaaaacac 14767169  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 31126436 - 31126493
Alignment:
Q  25 acatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtatt 82  Q
    |||| ||||||||||| ||||||| |||| || || |||||||||||||| |||||||    
T  31126436 acatatcctaggatctctggtttgatccttcttgttataatcaaaatcagtctgtatt 31126493  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 39164 - 39255
Alignment:
Q  15 aatatgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcctgtattgttcgccaaaaacacgggtgaaca 106  Q
    |||||||||||||||||||| ||| | | ||||| ||||||| ||||||| |||||  || |  | ||||||||||||||||  ||||||||    
T  39164 aatatgcacaacatgtcctaagatttctagtttgatcctgcttgtaataaccaaaactagaccttcttgttcgccaaaaacattggtgaaca 39255  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 376452 - 376507
Alignment:
Q  21 cacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcc 76  Q
    |||||||||||||||||| | ||||||| |||| || ||||||||||||| |||||    
T  376452 cacaacatgtcctaggatttctggtttgatcctccttgtaataatcaaaaccagcc 376507  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 4732475 - 4732417
Alignment:
Q  18 atgcacaacatgtcctaggatctttggtttggtcctgctcgtaataatcaaaatcagcc 76  Q
    ||||||||||||||||||||| | ||||||| ||||| | ||||||| ||||| |||||    
T  4732475 atgcacaacatgtcctaggatttctggtttgatcctgtttgtaataaccaaaaccagcc 4732417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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