View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17977_low_2 (Length: 428)
Name: NF17977_low_2
Description: NF17977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17977_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 103 - 362
Target Start/End: Complemental strand, 23126017 - 23125755
Alignment:
| Q |
103 |
tatacccatttgtggcaaggttattgataattgattgctagacctactagacgtgcctttgaaagtttaacagtttttgcggtgcaaattgta---atat |
199 |
Q |
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| T |
23126017 |
tatacccatttatggcaaggttattgataattgattgctatacctactagatgggcctttgaaagtttaacagtttttgcggtgcaaattgtagtaatat |
23125918 |
T |
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| Q |
200 |
gcatattttatacggtattaccttttttgttgttgagataaatggttactatggtcgattattgagtaaacccctagaagtttgaaatattctttaatcc |
299 |
Q |
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| T |
23125917 |
gcatattttatactgtattaccttttttgttgttgagataaatgtttactatggtcgattattgagtaaagaccaagaagtttgaaatattccttaatcc |
23125818 |
T |
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| Q |
300 |
taataccagcacaaaagatacaaaattcaagatattataccaaatgctgtgatatatatgtgt |
362 |
Q |
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| T |
23125817 |
taataccagcataaaagatacaaaattcaagcaattataccaaatgatgtgatatatatgtgt |
23125755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 23126961 - 23126901
Alignment:
| Q |
48 |
gaaacccaatgtatgtgtgtaaccttgttttatcaacaaaggttcatgtgtattctatacc |
108 |
Q |
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| T |
23126961 |
gaaacccaatgtatgtgtgtaaccttcttttatcaacaaaggttcatgtgtagtctatacc |
23126901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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