View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17977_low_20 (Length: 214)
Name: NF17977_low_20
Description: NF17977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17977_low_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 51 - 214
Target Start/End: Original strand, 22806470 - 22806633
Alignment:
| Q |
51 |
acatgctgcaaagttacaagcaattagcacattccaggattcaaggagcatagcaatcatgaataacatcttataacaggcgcaatgaacaaggtggctg |
150 |
Q |
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| T |
22806470 |
acatgctgcaaagttacaagaaattagcacattccaggattcaaggagcatggcaatcatgaataacatcttataacaggcgcaatgaacaaggtggcta |
22806569 |
T |
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| Q |
151 |
ttagactaaaaaatgcatcaagaatgatagaacctcacggaatatataagtataaagtgcactc |
214 |
Q |
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| T |
22806570 |
ttagactaacaaatgcatcaagaatgatagaacctcacggaatatacaagtataaagtgcactc |
22806633 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 28813661 - 28813589
Alignment:
| Q |
52 |
catgctgcaaagttacaagcaattagcacattccaggattcaaggagcatagcaatcatgaataacatcttat |
124 |
Q |
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| T |
28813661 |
catgatgcaaagctgcaagcaattagcacattctaagattcaaggagtatgccaatcatgaataacatcttat |
28813589 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 22323363 - 22323299
Alignment:
| Q |
60 |
aaagttacaagcaattagcacattccaggattcaaggagcatagcaatcatgaataacatcttat |
124 |
Q |
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| T |
22323363 |
aaagttgcaagaaattatcacattctaggcttcaaggaacatgacaatcatgaataaaatcttat |
22323299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 22338422 - 22338358
Alignment:
| Q |
60 |
aaagttacaagcaattagcacattccaggattcaaggagcatagcaatcatgaataacatcttat |
124 |
Q |
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|||||| |||| ||||| ||||||| ||| |||||||| ||| ||||||||||||| ||||||| |
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| T |
22338422 |
aaagttgcaagaaattatcacattctaggcttcaaggaacatgacaatcatgaataaaatcttat |
22338358 |
T |
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