View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17977_low_21 (Length: 213)
Name: NF17977_low_21
Description: NF17977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17977_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 43019719 - 43019924
Alignment:
| Q |
1 |
cagttgttgttcttcgcctatgctgccaccaactcatacctcggccgtctccttttgaaatgtcgatcatcgtcattgctgtcttcattttttctcactt |
100 |
Q |
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| T |
43019719 |
cagttgttgttcttcgcctatgctgccaccaactcatacctcggccgtctccttttgaaatgtcgatcatcgtcattgttgtcttcattttttctcactt |
43019818 |
T |
|
| Q |
101 |
cgtaataaccgtttgatgttgcggaagaacgtggtcgtttgcattcgagtttgcatgaacgtggtggctcttcttgcataggtcgttgacggtggtgttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43019819 |
cgtaataaccgtttgatgttgcggaagaacgtggtcgtttgcattcgagtttgcatgaacgtggtggctcttcttgcataggtcgttgacggtggtgttg |
43019918 |
T |
|
| Q |
201 |
atgatg |
206 |
Q |
| |
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|||||| |
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| T |
43019919 |
atgatg |
43019924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 35058367 - 35058482
Alignment:
| Q |
3 |
gttgttgttcttcgcctatgctgccaccaactcatacctcggccgtctccttttgaaatgtcgatcatcgtcattgctgtcttcattttttctcacttcg |
102 |
Q |
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||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
35058367 |
gttgttgctcttcacctatgcttccaccaactcatacctcggccgtctccttttgaaatgtcgatcatcgtc---tctgtcttcgttttttctcacttcg |
35058463 |
T |
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| Q |
103 |
taataaccgtttgatgttg |
121 |
Q |
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| T |
35058464 |
taataacagtttgatgttg |
35058482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 42807763 - 42807802
Alignment:
| Q |
32 |
actcatacctcggccgtctccttttgaaatgtcgatcatc |
71 |
Q |
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| T |
42807763 |
actcatacctcgaccgtctccttttgaaatgtcgatcatc |
42807802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 42807839 - 42807876
Alignment:
| Q |
87 |
attttttctcacttcgtaataaccgtttgatgttgcgg |
124 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
42807839 |
atttcttctcacttcgtaataaccgtttgatgttgcgg |
42807876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 35058499 - 35058528
Alignment:
| Q |
156 |
tgaacgtggtggctcttcttgcataggtcg |
185 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35058499 |
tgaacgtggtggctcttcttgcataggtcg |
35058528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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