View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17977_low_22 (Length: 205)

Name: NF17977_low_22
Description: NF17977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17977_low_22
NF17977_low_22
[»] chr8 (3 HSPs)
chr8 (19-190)||(35226619-35226790)
chr8 (74-146)||(40260462-40260534)
chr8 (53-131)||(16250091-16250169)
[»] chr6 (2 HSPs)
chr6 (29-182)||(3532049-3532201)
chr6 (45-108)||(19660410-19660473)
[»] chr2 (2 HSPs)
chr2 (34-190)||(40599634-40599789)
chr2 (52-169)||(29651720-29651837)
[»] chr4 (3 HSPs)
chr4 (37-191)||(52542996-52543149)
chr4 (63-131)||(22681277-22681345)
chr4 (89-169)||(42727944-42728024)
[»] chr1 (2 HSPs)
chr1 (34-190)||(3838133-3838288)
chr1 (63-165)||(47783106-47783208)
[»] chr3 (1 HSPs)
chr3 (34-120)||(44904798-44904884)
[»] chr5 (1 HSPs)
chr5 (53-131)||(29865926-29866004)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 35226790 - 35226619
Alignment:
Q  19 agatggaaatatagctcgattcaaatttgtgggggaagcaggagtggttcatgatggtagatcacatatgcaaagagtctcatacttaaggaagaaatgt 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35226790 agatggaaatatagctcgattcaaatttgtgggggaagctggagtggttcatgatggtagatcacatatgcaaagagtctcatacttaaggaagaaatgt 35226691  T
Q  119 tagtatgtcaagtattagttaaagtttttcatttaatgcaagagtaaatgtcaaagaaaatttaaattatat 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35226690 tagtatgtcaagtattagttaaagtttttcatttaatgcaagagtaaatgtcaaagaaaatttaaattatat 35226619  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 40260462 - 40260534
Alignment:
Q  74 ggtagatcacatatgcaaagagtctcatacttaaggaagaaatgttagtatgtcaagtattagttaaagtttt 146  Q
    ||||||||||| ||||| |||||||||||||| ||||||| |||||| | |||||||||| ||||||||||||    
T  40260462 ggtagatcacaaatgcagagagtctcatacttgaggaagagatgttaatgtgtcaagtataagttaaagtttt 40260534  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 16250169 - 16250091
Alignment:
Q  53 gaagcaggagtggttcatgatggtagatcacatatgcaaagagtctcatacttaaggaagaaatgttagtatgtcaagt 131  Q
    ||||||| | ||||| ||| ||||||||| |||||||| ||| |||| ||||| |||||||||||||| | ||||||||    
T  16250169 gaagcagaattggtttatggtggtagatctcatatgcagagaatctcgtacttgaggaagaaatgttaatgtgtcaagt 16250091  T

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Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 182
Target Start/End: Complemental strand, 3532201 - 3532049
Alignment:
Q  29 atagctcgattcaaatttgtgggggaagcaggagtggttcatgatggtagatcacatatgcaaagagtctcatacttaaggaagaaatgttagtatgtca 128  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| || ||||||||| ||||||||| | |||||| |||||    
T  3532201 atagcccgattcaactttgtgggggaagcaggagtgattcatgatggtagatcacagatgcagag-gtctcatacataaggaagagacgttagtctgtca 3532103  T
Q  129 agtattagttaaagtttttcatttaatgcaagagtaaatgtcaaagaaaattta 182  Q
    ||||||| |||||||||| |||| ||||||||||||||||| | |||| |||||    
T  3532102 agtattaattaaagttttgcattgaatgcaagagtaaatgttatagaacattta 3532049  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 19660473 - 19660410
Alignment:
Q  45 ttgtgggggaagcaggagtggttcatgatggtagatcacatatgcaaagagtctcatacttaag 108  Q
    |||||| ||||||| || |||||| |  |||||||||||  |||||||||||||||||||||||    
T  19660473 ttgtggtggaagcacgaatggttcttactggtagatcacggatgcaaagagtctcatacttaag 19660410  T

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Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 34 - 190
Target Start/End: Complemental strand, 40599789 - 40599634
Alignment:
Q  34 tcgattcaaatttgtgggggaagcaggagtggttcatgatggtagatcacatatgcaaagagtctcatacttaaggaagaaatgttagtatgtcaagtat 133  Q
    ||||||||| ||||||||| ||||| ||||| |||| | |||||||||||| |||||||||||||||||||| ||||||| |||||| | ||| |||| |    
T  40599789 tcgattcaattttgtggggaaagcaagagtgattcaaggtggtagatcacagatgcaaagagtctcatacttgaggaagagatgttaatgtgttaagtgt 40599690  T
Q  134 tagttaaagtttttcatttaatgcaagagtaaatgtcaaagaaaatttaaattatat 190  Q
     |||||||||||| || | ||||||||||||||| | |||||  |||||||| ||||    
T  40599689 aagttaaagttttgca-tgaatgcaagagtaaattttaaagagcatttaaatgatat 40599634  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 169
Target Start/End: Original strand, 29651720 - 29651837
Alignment:
Q  52 ggaagcaggagtggttcatgatggtagatcacatatgcaaagagtctcatacttaaggaagaaatgttagtatgtcaagtattagttaaagtttttcatt 151  Q
    |||||||| |||||||| |  ||||| ||| || ||||| ||||| |||||||| ||||||  |||||| | |||||| | | |||||||||||  ||||    
T  29651720 ggaagcagaagtggttccttgtggtatatctcaaatgcatagagtttcatacttgaggaagtgatgttaatgtgtcaaatgtgagttaaagtttcacatt 29651819  T
Q  152 taatgcaagagtaaatgt 169  Q
     |||||||||||| ||||    
T  29651820 gaatgcaagagtagatgt 29651837  T

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Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 37 - 191
Target Start/End: Complemental strand, 52543149 - 52542996
Alignment:
Q  37 attcaaatttgtgggggaagcaggagtggttcatgatggtagatcacatatgcaaagagtctcatacttaaggaagaaatgttagtatgtcaagtattag 136  Q
    |||||| ||||||||| |||  |||||| |||| | |||||||||||| |||||||||||||||||||| ||||||| || ||| | |||||||| | ||    
T  52543149 attcaattttgtggggaaagtgggagtgattcaaggtggtagatcacaaatgcaaagagtctcatacttgaggaagagatattaatgtgtcaagtgtaag 52543050  T
Q  137 ttaaagtttttcatttaatgcaagagtaaatgtcaaagaaaatttaaattatatg 191  Q
    |||||||||| || | || |||||||||||| | |||||| |||||||| |||||    
T  52543049 ttaaagttttgca-tgaacgcaagagtaaattttaaagaacatttaaatgatatg 52542996  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 22681345 - 22681277
Alignment:
Q  63 tggttcatgatggtagatcacatatgcaaagagtctcatacttaaggaagaaatgttagtatgtcaagt 131  Q
    ||||||||||||||||| |||| ||||| |||||||| ||||||||||| |||||||| | ||||||||    
T  22681345 tggttcatgatggtagaccacagatgcagagagtctcgtacttaaggaataaatgttaatgtgtcaagt 22681277  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 42728024 - 42727944
Alignment:
Q  89 caaagagtctcatacttaaggaagaaatgttagtatgtcaagtattagttaaagtttttcatttaatgcaagagtaaatgt 169  Q
    |||||||||||| | |||||  ||| |||||| | |||||| | ||| |||||||||| ||||| ||||||||||| ||||    
T  42728024 caaagagtctcacaattaagtgagatatgttaatgtgtcaattgttacttaaagttttacatttgatgcaagagtagatgt 42727944  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 190
Target Start/End: Complemental strand, 3838288 - 3838133
Alignment:
Q  34 tcgattcaaatttgtgggggaagcaggagtggttcatgatggtagatcacatatgcaaagagtctcatacttaaggaagaaatgttagtatgtcaagtat 133  Q
    ||||||||| ||||||||| |||| |||||  |||| | |||||||||||| || ||||||||||||||||| |||| || |||||| | |||||||| |    
T  3838288 tcgattcaattttgtggggaaagcgggagtcattcaaggtggtagatcacagatacaaagagtctcatacttgaggacgagatgttaatgtgtcaagtgt 3838189  T
Q  134 tagttaaagtttttcatttaatgcaagagtaaatgtcaaagaaaatttaaattatat 190  Q
     |||||||||||| || | || |||||| ||||| | |||||| |||||||| ||||    
T  3838188 aagttaaagttttgca-tgaacgcaagaataaattttaaagaacatttaaatgatat 3838133  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 47783106 - 47783208
Alignment:
Q  63 tggttcatgatggtagatcacatatgcaaagagtctcatacttaaggaagaaatgttagtatgtcaagtattagttaaagtttttcatttaatgcaagag 162  Q
    ||||| ||||||||| |||||| ||||  |||||||| || |||||||| | |||||| | |||||||| | |||||||||||  ||||   ||||||||    
T  47783106 tggttaatgatggtatatcacagatgcggagagtctcgtatttaaggaatagatgttaatgtgtcaagtgtgagttaaagtttcacattggctgcaagag 47783205  T
Q  163 taa 165  Q
    |||    
T  47783206 taa 47783208  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 44904798 - 44904884
Alignment:
Q  34 tcgattcaaatttgtgggggaagcaggagtggttcatgatggtagatcacatatgcaaagagtctcatacttaaggaagaaatgtta 120  Q
    ||||||||| ||||||||| |||| | |||| |||| | || ||||||||| |||||||||||||||||||| ||||||| ||||||    
T  44904798 tcgattcaattttgtggggaaagcggaagtgattcaaggtgctagatcacaaatgcaaagagtctcatacttgaggaagagatgtta 44904884  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 29866004 - 29865926
Alignment:
Q  53 gaagcaggagtggttcatgatggtagatcacatatgcaaagagtctcatacttaaggaagaaatgttagtatgtcaagt 131  Q
    ||||||| | ||||| ||| ||||||||| |||||||| |||||||| ||| | |||||||||||||| | ||||||||    
T  29866004 gaagcagaattggtttatggtggtagatctcatatgcagagagtctcgtacatgaggaagaaatgttaatgtgtcaagt 29865926  T

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