View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17977_low_3 (Length: 398)

Name: NF17977_low_3
Description: NF17977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17977_low_3
NF17977_low_3
[»] chr4 (11 HSPs)
chr4 (10-356)||(3755314-3755672)
chr4 (10-234)||(3770617-3770841)
chr4 (67-325)||(3766911-3767169)
chr4 (230-380)||(3771304-3771454)
chr4 (67-358)||(3751516-3751807)
chr4 (153-356)||(3745785-3745988)
chr4 (67-322)||(3762495-3762750)
chr4 (67-335)||(3780889-3781157)
chr4 (67-358)||(3776576-3776867)
chr4 (25-65)||(3780835-3780875)
chr4 (67-175)||(3844990-3845098)
[»] chr7 (1 HSPs)
chr7 (230-358)||(25985336-25985461)
[»] scaffold0433 (1 HSPs)
scaffold0433 (67-175)||(10050-10158)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 3755314 - 3755672
Alignment:
Q  10 attatactcgacaacagcatccccagatttgacatcaaaccaatgagtattagcttcagca------------aatctgaaaagtccaataccaccaatc 97  Q
    ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||            |||||||||| |||| |||||||||||    
T  3755314 attatactcaacaatagcatccccagatttgatatcaaaccaatgagtattagcttcagcataacctctagcaaatctgaaaaatccactaccaccaatc 3755413  T
Q  98 acaggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatactttccttcagtaaaaacaaaattcatagcca 197  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  3755414 acaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagcaaaattcatagcca 3755513  T
Q  198 ttagcaaatcaacttcatctttgcatgcagatgcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtc 297  Q
    | |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||| |||  | ||||||||||||||||||||||||    
T  3755514 taagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtc 3755613  T
Q  298 gatcatgcggactgaaccaaaagcagtggttgtgtttagtttcattggtggtggaacaa 356  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  3755614 gatcatgcggactgaaccaaaggcagtggttgagtttagtttcattggtggtgggacaa 3755672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 3770617 - 3770841
Alignment:
Q  10 attatactcgacaacagcatccccagatttgacatcaaaccaatgagtattagcttcagcaaatctgaaaagtccaataccaccaatcacaggcatctct 109  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3770617 attatactcgacaacagcatccccagatttgatatcaaaccaatgagtattagcttcagcaaatctgaaaagtccaataccaccaatcataggcatctct 3770716  T
Q  110 caaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatactttccttcagtaaaaacaaaattcatagccattagcaaatcaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3770717 caaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatactttccttcagtaaaaacaaaattcatagccattagcaaatcaa 3770816  T
Q  210 cttcatctttgcatgcagatgcatc 234  Q
    |||||||||||||||||||||||||    
T  3770817 cttcatctttgcatgcagatgcatc 3770841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 67 - 325
Target Start/End: Original strand, 3766911 - 3767169
Alignment:
Q  67 agcaaatctgaaaagtccaataccaccaatcacaggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatac 166  Q
    |||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  3766911 agcaaatctgaaaactccactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatac 3767010  T
Q  167 tttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatcgaacccttgagattttccaacaagcttagaac 266  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||||     
T  3767011 tttccttcagtaaaagcaaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaat 3767110  T
Q  267 tcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtg 325  Q
    |||  | ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3767111 tcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaggcagtg 3767169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 230 - 380
Target Start/End: Original strand, 3771304 - 3771454
Alignment:
Q  230 gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtggttg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3771304 gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtggttg 3771403  T
Q  330 tgtttagtttcattggtggtggaacaattattaccgaaggagggttttttc 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3771404 tgtttagtttcattggtggtggaacaattattaccgaaggagggttttttc 3771454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 67 - 358
Target Start/End: Original strand, 3751516 - 3751807
Alignment:
Q  67 agcaaatctgaaaagtccaataccaccaatcacaggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatac 166  Q
    ||||||||||||||||||| |||||||||| | ||||||||||| | | |||| || | ||  |||||| ||||| ||||||| | |||| |||||||||    
T  3751516 agcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatac 3751615  T
Q  167 tttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatcgaacccttgagattttccaacaagcttagaac 266  Q
    ||||||||| | ||| |||| ||||||||||| || ||| |||  |||||||   |||||||||||| ||| ||||||| ||||||||||||||||||||    
T  3751616 tttccttcaatgaaagcaaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttccaacaagcttagaac 3751715  T
Q  267 tcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtggttgtgtttagtttcattggtggtggaacaatt 358  Q
    ||| || |||||||| ||| |||||||  || | ||||  |||||||||||||  ||||||||||||||| |||| ||||||||||||||||    
T  3751716 tcaattgtggtcctatagtcaaagggtcatcaaacatgttgactgaaccaaaataagtggttgtgtttagcttcaatggtggtggaacaatt 3751807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 153 - 356
Target Start/End: Original strand, 3745785 - 3745988
Alignment:
Q  153 tacttccattatactttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatcgaacccttgagattttcc 252  Q
    |||| |||||||||||||||||| | ||| ||||| |||||||||| | ||||  ||  ||||| ||  ||||||||||||  |||||||||| ||||||    
T  3745785 tactcccattatactttccttcaatgaaagcaaaagtcatagccatgaacaaactaaactcatcctttgatgcagatgcatacaacccttgagcttttcc 3745884  T
Q  253 aacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtggttgtgtttagtttcattggtggtgga 352  Q
    ||||||||||||||||| || |||||||||||||||||||||||| || |||  |||| ||||||||| ||| ||||||||||| |||| |||| ||||     
T  3745885 aacaagcttagaactcatttttggtcctaaagttaaagggttgtcaataatgttgactaaaccaaaagaagtagttgtgtttagcttcaatggtagtggt 3745984  T
Q  353 acaa 356  Q
    ||||    
T  3745985 acaa 3745988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 67 - 322
Target Start/End: Original strand, 3762495 - 3762750
Alignment:
Q  67 agcaaatctgaaaagtccaataccaccaatcacaggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatac 166  Q
    ||||||||||||||||||| | |||||||  ||||||||||| | ||| |||| || | |   |||||| ||||| |||||||   |||| |||||||||    
T  3762495 agcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatac 3762594  T
Q  167 tttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatcgaacccttgagattttccaacaagcttagaac 266  Q
    ||||||||| | ||| |||||||||  | ||| || ||| | | ||| || |   |||||||||||| ||| ||||||| | |||||||||| |||||||    
T  3762595 tttccttcaatgaaagcaaaattcactgtcataagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagctcttccaacaagtttagaac 3762694  T
Q  267 tcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagca 322  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||    
T  3762695 tcagttcgggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagca 3762750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 67 - 335
Target Start/End: Original strand, 3780889 - 3781157
Alignment:
Q  67 agcaaatctgaaaagtccaataccaccaatcacaggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatac 166  Q
    ||||||||||||||||||| |||||||||  ||||||||||| | |||   || ||   ||  |||||| || |  ||||||||  |||| |||||||||    
T  3780889 agcaaatctgaaaagtccactaccaccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatac 3780988  T
Q  167 tttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatcgaacccttgagattttccaacaagcttagaac 266  Q
    ||||||||| | ||| |||||||||| | ||| || ||| | | ||| ||||   | |||||||||| ||| ||||||| | ||||||||||||||||||    
T  3780989 tttccttcaatgaaagcaaaattcattgtcataagaaaacctagttcttcttgtgaagcagatgcatagaatccttgagctcttccaacaagcttagaac 3781088  T
Q  267 tcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtggttgtgttta 335  Q
    ||||||||||||||||||||||||||||||| ||||||   ||  |||||||||| ||||||| |||||    
T  3781089 tcagttctggtcctaaagttaaagggttgtcaatcatgttaaccaaaccaaaagcggtggttgagttta 3781157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 67 - 358
Target Start/End: Original strand, 3776576 - 3776867
Alignment:
Q  67 agcaaatctgaaaagtccaataccaccaatcacaggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatac 166  Q
    ||||||||||||||||||| |||||||||  |||||||| || | ||| |||| |  | ||  |||||| ||||| |||||||   |||| |||||||||    
T  3776576 agcaaatctgaaaagtccactaccaccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatac 3776675  T
Q  167 tttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatcgaacccttgagattttccaacaagcttagaac 266  Q
    ||||||||| | ||| |||||||||| | ||| || ||| | | ||| || |   | |||||||||| ||| ||||||| | | |||||||| |||||||    
T  3776676 tttccttcaatgaaagcaaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctaccaacaagtttagaac 3776775  T
Q  267 tcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtggttgtgtttagtttcattggtggtggaacaatt 358  Q
    ||| ||| ||||||||||||||||||||||| |||||||  ||| ||||||||  |||||||| ||||| |||   || |||||||||||||    
T  3776776 tcaattcgggtcctaaagttaaagggttgtcaatcatgctaactaaaccaaaaaaagtggttgagtttacttttgatgatggtggaacaatt 3776867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 3780835 - 3780875
Alignment:
Q  25 agcatccccagatttgacatcaaaccaatgagtattagctt 65  Q
    ||||||||||| ||||| ||||| |||||||||||||||||    
T  3780835 agcatccccagttttgaaatcaatccaatgagtattagctt 3780875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 3844990 - 3845098
Alignment:
Q  67 agcaaatctgaaaagtccaataccaccaatcacaggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatac 166  Q
    ||||||||| ||||| ||| | ||||||||||||||||| |||| ||| || | | |  || |||| |||||||| ||||||| | | |||||||||||     
T  3844990 agcaaatctaaaaagcccacttccaccaatcacaggcatttctctaaccttttcatatgcatcatttcttcccaagatagtaattgtgcttccattatat 3845089  T
Q  167 tttccttca 175  Q
    || ||||||    
T  3845090 ttcccttca 3845098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 358
Target Start/End: Complemental strand, 25985461 - 25985336
Alignment:
Q  230 gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtggttg 329  Q
    |||| ||| ||||| | ||||||||| |  || ||||||| ||  |||||||| ||||||||||| || ||||||   ||| ||||||||||||||||||    
T  25985461 gcatagaatccttgtgcttttccaaccaatttggaactcaattgaggtcctaaggttaaagggttctcaatcatgttaactaaaccaaaagcagtggttg 25985362  T
Q  330 tgtttagtttcattggtggtggaacaatt 358  Q
     |||   |||||  |||||||||||||||    
T  25985361 agtt---tttcaaaggtggtggaacaatt 25985336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 10158 - 10050
Alignment:
Q  67 agcaaatctgaaaagtccaataccaccaatcacaggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatac 166  Q
    ||||||||| ||||| ||| | ||||||||||||||||| |||| ||| || | | |  || |||| |||||||| ||||||| | | |||||||||||     
T  10158 agcaaatctaaaaagcccacttccaccaatcacaggcatttctctaaccttttcatatgcatcatttcttcccaagatagtaattgtgcttccattatat 10059  T
Q  167 tttccttca 175  Q
    || ||||||    
T  10058 ttcccttca 10050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University