View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17977_low_4 (Length: 371)
Name: NF17977_low_4
Description: NF17977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17977_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 4654635 - 4654915
Alignment:
| Q |
19 |
atacattgagtaggaagggaaatttccataaaacagcacttgagactgatgattgaaatggtcaaatgatttccttggggagcaattagg-----ataat |
113 |
Q |
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| T |
4654635 |
atacattgagtaggaagggaaatttccataaaacagcacttgagactgatcattgaaatggtcaaatgatttccttggggagcaattaggatcacataat |
4654734 |
T |
|
| Q |
114 |
tgtggataggaaaacactcatttctttttatcaattgaaaaccataggaaggaaataataatactaatgcacttcannnnnnnnnacaatattggagtga |
213 |
Q |
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| T |
4654735 |
tgtggataggaaaacactcatttctttttatcaattgaaaaccataggaaggaaataataatactaatgcacttcatttttttttacaatattggagtga |
4654834 |
T |
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| Q |
214 |
catatttatttatttcacagttcacacatatttnnnnnnnnctatgactaaaaagaaaaattataattttatcaaactaaaca |
296 |
Q |
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| T |
4654835 |
catatttatttatttcacagttcacacatattt-agaaaaactatgact-aaaagaaaaattataattttatcaaactaaaca |
4654915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 4644849 - 4644987
Alignment:
| Q |
28 |
gtaggaagggaaatttccataaaacagcacttgagactgatgattgaaatggtcaaatgatttccttggggagcaattagga-----taattgtg--gat |
120 |
Q |
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| T |
4644849 |
gtaggaagggaaatttccataaaacaacacttgagactgatcattgaaatggtcaaatgatctccttgggaagcaattaggatcacgtaattgtggagat |
4644948 |
T |
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| Q |
121 |
aggaaaacactcatttct-ttttatcaattgaaaaccata |
159 |
Q |
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| T |
4644949 |
aggaaaactctcatttctgttttat-aattcaaaaccata |
4644987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 4674521 - 4674601
Alignment:
| Q |
109 |
ataattgtggataggaaaacactcatttctttttatcaattgaaaaccataggaaggaaataataatactaatgcacttca |
189 |
Q |
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| T |
4674521 |
ataattgtggataggaaaacactcatttctttttactaactgaaaatcatacgaaggaaataaaaatactaatgcacttca |
4674601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 170
Target Start/End: Original strand, 4673929 - 4674033
Alignment:
| Q |
70 |
attgaaatggtcaaatgatttccttggggagcaattagg-----ataattgtggataggaaaacactcatttct-ttttatcaattgaaaaccataggaa |
163 |
Q |
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| T |
4673929 |
attgaaatggtcaaatgatttccttaggaagaaattaggatcacataattgtggatagg-aaactttcatttctgttttat-aattaaaaaccatacgaa |
4674026 |
T |
|
| Q |
164 |
ggaaata |
170 |
Q |
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|||||| |
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| T |
4674027 |
agaaata |
4674033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 359
Target Start/End: Original strand, 4654937 - 4654977
Alignment:
| Q |
318 |
gtggctgaagttcacatattttaaatgttgatgcacaggttc |
359 |
Q |
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| T |
4654937 |
gtggctgaagttcacat-ttttaaatgttgatgtacaggttc |
4654977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 4795057 - 4795127
Alignment:
| Q |
109 |
ataattgtggataggaaaacactcatttctttttatcaattgaaaaccataggaaggaaataataatactaat |
181 |
Q |
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| T |
4795057 |
ataatcgtggataggaaaacactaatt--tttttattaatgaaaaaccatacgaaggaaatagaaatactaat |
4795127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 15028957 - 15028985
Alignment:
| Q |
317 |
agtggctgaagttcacatattttaaatgt |
345 |
Q |
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| T |
15028957 |
agtggctgaagttcacatattttaaatgt |
15028985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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