View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17977_low_5 (Length: 352)
Name: NF17977_low_5
Description: NF17977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17977_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 342
Target Start/End: Original strand, 47059724 - 47060046
Alignment:
| Q |
20 |
agagcgaggatgtttgctgatttgttgtataaattgattgagaaagggcattcaagtgttaggaatacaattatggaagaagaatcctacgacaagttct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47059724 |
agagcgaggatgtttgctgatttgttgtataaattgattgaaaaagggcattcaagtgttaggaatacaattatggaagaagaatcctacgacaagttct |
47059823 |
T |
|
| Q |
120 |
tgaattgcaataaacaagtatagatatgtcttctcttagcactgagaatccaatggcatttcaagatctaaggatagcatgggcgcttaaattttgaaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47059824 |
tgaattgcaataaacaagtatagatatgtcttctcttagcactgagaatccaatggcatttcaagatctaaggatagcatgggcgcttaaattttgaatt |
47059923 |
T |
|
| Q |
220 |
ataggttagtatggggactttaggatgtatatttttatctctgattattataggttagtcttgaacatcttggtttggttttattttcatcttttacatc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47059924 |
ataggttagtatggggactttaggatgtatatttctatctcttattattataggttagtcttgaacatcttggtttggttttattttcatcttttacatc |
47060023 |
T |
|
| Q |
320 |
tatagaatattggttttcctttg |
342 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
47060024 |
tatagaatattggttttcctttg |
47060046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 11726671 - 11726607
Alignment:
| Q |
37 |
tgatttgttgtataaattgattgagaaagggcattcaagtgttaggaatacaattatggaagaaga |
102 |
Q |
| |
|
|||||| ||||| |||||| ||||||||||| ||||| |||||| |||||| |||||||||||||| |
|
|
| T |
11726671 |
tgattttttgtagaaattgcttgagaaagggtattcatgtgttatgaatac-attatggaagaaga |
11726607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University