View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17977_low_6 (Length: 349)
Name: NF17977_low_6
Description: NF17977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17977_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 9798287 - 9798117
Alignment:
| Q |
14 |
aagaatatagctaagttaacaatgatatgttagtagatttgctttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgct |
113 |
Q |
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| T |
9798287 |
aagaatgtagctaagttaacaatgatatgttagtagatttgctttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgct |
9798188 |
T |
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| Q |
114 |
gcataattacttgcgggtagttgggtttggaaatttggtgctaaagggggttgttgtcatttcttcgaagg |
184 |
Q |
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| T |
9798187 |
gcataattacttgcgggtagttgggtttggaaatttggtgctaaagggggttgttgtcattttttcgaagg |
9798117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 184 - 331
Target Start/End: Original strand, 45177109 - 45177256
Alignment:
| Q |
184 |
gttgagagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatttgagcaggttggaattgctaataacac |
283 |
Q |
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| T |
45177109 |
gttgagagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatttgagcaggttggaattgctaataacac |
45177208 |
T |
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| Q |
284 |
tggctatgatgagattcatgatgttcatagcttagtagcatccagagg |
331 |
Q |
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| T |
45177209 |
ttgctatgatgagattcatgatgttcatagcttagtagcatccagagg |
45177256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 57 - 184
Target Start/End: Original strand, 45175559 - 45175686
Alignment:
| Q |
57 |
ttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctgcataattacttgcgggtagttgggtttggaaatttggtgcta |
156 |
Q |
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| T |
45175559 |
ttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctgcataattacttgcgggtagttgggtttggaaatttggtgcta |
45175658 |
T |
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| Q |
157 |
aagggggttgttgtcatttcttcgaagg |
184 |
Q |
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| T |
45175659 |
aagggggttgttgtcatttattcgaagg |
45175686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 184 - 331
Target Start/End: Complemental strand, 45093735 - 45093587
Alignment:
| Q |
184 |
gttgagagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatt-tgagcaggttggaattgctaataaca |
282 |
Q |
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| T |
45093735 |
gttgggagttcattattttgtcatttgtagcaaaatgtattgtttttaacgtattgttaccatttgttttagtatgagcaggttggaattgctaattaca |
45093636 |
T |
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| Q |
283 |
ctggctatgatgagattcatgatgttcatagcttagtagcatccagagg |
331 |
Q |
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| T |
45093635 |
ctggctatcatgtgattcatgatgttcatagcttagtagcatccagagg |
45093587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 189 - 331
Target Start/End: Complemental strand, 44666689 - 44666546
Alignment:
| Q |
189 |
gagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaa-tttgagcaggttggaattgctaataacactggc |
287 |
Q |
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|||||||||| ||||||| ||||| ||||||| ||||| ||||||||||||| ||| | |||| | |||||||||| || ||||||||||||||| || |
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| T |
44666689 |
gagttcattagtttgtcaagtgtagcacaatatatagtttttaacgtattattatcatccgttttagtttgagcaggctgcaattgctaataacacctgc |
44666590 |
T |
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| Q |
288 |
tatgatgagattcatgatgttcatagcttagtagcatccagagg |
331 |
Q |
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| T |
44666589 |
tatgatgagattcttgatgttcatagcttagtagcatctagagg |
44666546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 189 - 331
Target Start/End: Complemental strand, 44686013 - 44685870
Alignment:
| Q |
189 |
gagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaa-tttgagcaggttggaattgctaataacactggc |
287 |
Q |
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|||||||||| ||||||| ||||| ||||||| ||||| ||||||||||||| ||| | |||| | |||||||||| || ||||||||||||||| || |
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| T |
44686013 |
gagttcattagtttgtcaagtgtagcacaatatatagtttttaacgtattattatcatccgttttagtttgagcaggctgcaattgctaataacacctgc |
44685914 |
T |
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| Q |
288 |
tatgatgagattcatgatgttcatagcttagtagcatccagagg |
331 |
Q |
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| T |
44685913 |
tatgatgagattcttgatgttcatagcttagtagcatctagagg |
44685870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 257 - 331
Target Start/End: Original strand, 35816689 - 35816763
Alignment:
| Q |
257 |
tgagcaggttggaattgctaataacactggctatgatgagattcatgatgttcatagcttagtagcatccagagg |
331 |
Q |
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| T |
35816689 |
tgagcaggttggaattgctaattacactggctatggtgagattcatgatgttcatagcttagtagcatccagagg |
35816763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 45102876 - 45102799
Alignment:
| Q |
250 |
tttaatttgagcaggttggaattgctaataacactggctatgatgagattcatgatgttcatagcttagtagcatcca |
327 |
Q |
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| T |
45102876 |
tttagtttgagcaggttggagttgctaataacactggctatgatgagtttcatgatgttcatagcttagtatcatcca |
45102799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 189 - 331
Target Start/End: Complemental strand, 45568412 - 45568270
Alignment:
| Q |
189 |
gagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatt-tgagcaggttggaattgctaataacactggc |
287 |
Q |
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||||||||||| ||||||| |||| ||||| | | ||| |||||| |||| | ||| ||||||| | | ||||||||| |||||||||||| ||||||| |
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| T |
45568412 |
gagttcattatgttgtcatttgtagcacaa-atacagtttttaacatattgttatcatttgttttagtatgagcaggtaggaattgctaattacactggt |
45568314 |
T |
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| Q |
288 |
tatgatgagattcatgatgttcatagcttagtagcatccagagg |
331 |
Q |
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| T |
45568313 |
tacaatgagattcatgatgttcatagcttagtagcatccagagg |
45568270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 45094857 - 45094818
Alignment:
| Q |
44 |
tagtagatttgctttgatcctgtaattgaagaacaactta |
83 |
Q |
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| T |
45094857 |
tagtagatttgctttgatcctgcaactgaagaacaactta |
45094818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 45569755 - 45569688
Alignment:
| Q |
85 |
ggctgctgctttttgtgtaatagatcgctgcat-aattacttgcgggtagttgggtttggaaatttgg |
151 |
Q |
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| T |
45569755 |
ggcttctgctttttatgtaatagttcgctgcataaattacttgctggtagtaggatgtggaaatttgg |
45569688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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