View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17977_low_9 (Length: 272)
Name: NF17977_low_9
Description: NF17977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17977_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 27 - 253
Target Start/End: Complemental strand, 2994245 - 2994023
Alignment:
| Q |
27 |
aattcaagtttgaatggttaagtatggcatcaatcggaaatgaaagaaatgttgaatatataattgaggtgattaatatacttaatacttcaataatttg |
126 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2994245 |
aattcaagtttgaatagttaagtatgacatcaatcgaaaatgaaagaaatgttgaatatataattgaggtgattaatatatttaatacttcaataatttg |
2994146 |
T |
|
| Q |
127 |
gataaagacacggtgtcaaagtttttagaagtctaaggctctagaaatacacatgagtgttggcaattagctagaatatgattaatctgaaaattataac |
226 |
Q |
| |
|
|||||||| | ||||||||| |||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |
|
|
| T |
2994145 |
gataaagatatggtgtcaaaatttttaaaagtctacgactctagaaatacacatgagtgttggcaat----tagaatatgattaatctgaatattattac |
2994050 |
T |
|
| Q |
227 |
cttaaattaaaaatatctaaccttaat |
253 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
2994049 |
tttaaattaaaaatatctaaccttaat |
2994023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University