View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_high_10 (Length: 482)
Name: NF17978_high_10
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 11 - 466
Target Start/End: Original strand, 15116905 - 15117360
Alignment:
| Q |
11 |
cacagaagtcacattcagatgataagattttgagttcaagatagtgtgtaagaatgtgaagtacttggtgtgaaggtatctgcatcactgcatgctaaag |
110 |
Q |
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| T |
15116905 |
cacagaagtcacactcagatgataagattttgagttcaaggtagtgtgtaagaatgtgaagtacttagtgtgaaggtatctgcatcactgcattctaaag |
15117004 |
T |
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| Q |
111 |
ctatgtatggtacatatgatgagtattcaaagcacgcacgtttctctttggaaaaataattgaagttgttacattattcaaacttattgacatgaatatt |
210 |
Q |
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| T |
15117005 |
ctatgtatggtacatatgatgagtattcaaagcacgcacgtttctctttggaaaaataattgaagttgttacattattcaaacttattgacatgaatatt |
15117104 |
T |
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| Q |
211 |
ccacggttttgtaataatttcgatcctaataagtacaaatattgttgacttcaaagtaaaagcaatgcgttcatattgacagtgcagtagtgcacatcat |
310 |
Q |
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| T |
15117105 |
ccacggttttgtaataatttcgatcctaataagtacaaatattgttgacttcaaagtaaaggcaatgcgttcatattgacagtgcagtagtgcacatcat |
15117204 |
T |
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| Q |
311 |
tgtagagtagaccaatcagattcacgtcaccggattatggagattgtagatgctgtcggtgtaagtgttgtccttatgtgcccttcagatttgaatattt |
410 |
Q |
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| T |
15117205 |
tgtagagtagaccaatcagattcacgtcaccggatcatggagattgtagatgctgtcagtgtaagtgttgtccttatgtgcccttcagatttgaatattt |
15117304 |
T |
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| Q |
411 |
cattgaatcttattggtgatttataggtggtaaaaattctcttacgagctacggtg |
466 |
Q |
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| T |
15117305 |
catggaatcttattggtgatttataggtggtaaaaattctcttacgggctacggtg |
15117360 |
T |
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