View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17978_high_12 (Length: 415)

Name: NF17978_high_12
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17978_high_12
NF17978_high_12
[»] chr5 (19 HSPs)
chr5 (3-399)||(7190788-7191184)
chr5 (4-399)||(10654229-10654624)
chr5 (3-370)||(10662141-10662508)
chr5 (21-257)||(19608034-19608270)
chr5 (90-223)||(10719101-10719234)
chr5 (93-213)||(11050085-11050205)
chr5 (21-277)||(9838477-9838733)
chr5 (43-140)||(10598915-10599012)
chr5 (90-209)||(10749232-10749351)
chr5 (37-259)||(10578827-10579049)
chr5 (75-140)||(10590713-10590778)
chr5 (90-275)||(10765266-10765451)
chr5 (41-140)||(10602577-10602676)
chr5 (90-140)||(10742988-10743038)
chr5 (112-356)||(10593654-10593898)
chr5 (70-120)||(10664925-10664975)
chr5 (90-258)||(10562900-10563068)
chr5 (21-202)||(10609514-10609695)
chr5 (96-293)||(10556799-10556996)
[»] chr3 (1 HSPs)
chr3 (15-218)||(31469367-31469564)
[»] chr6 (5 HSPs)
chr6 (93-209)||(12897441-12897557)
chr6 (93-209)||(12905062-12905178)
chr6 (90-209)||(12930149-12930268)
chr6 (89-209)||(12946513-12946633)
chr6 (93-209)||(12955954-12956070)
[»] chr2 (1 HSPs)
chr2 (93-209)||(17925623-17925739)


Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 3 - 399
Target Start/End: Original strand, 7190788 - 7191184
Alignment:
Q  3 gagaccgataacttggcgttgctcaagttcaaagaatcaatatctaatgacccatatggaatcttggcctcttggaatagttcaactcacttctgcaagt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7190788 gagaccgataacttggcgttgctcaagttcaaagaatcaatatctaatgatccatatggaatcttggcctcttggaatagttcaactcacttctgcaagt 7190887  T
Q  103 ggtatggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatgttggcaatct 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7190888 ggtatggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatgttggcaatct 7190987  T
Q  203 ctcttttttgagaaacctcaaccttgcacacaatagtttcttcggaaaaatcccacagaaactcggtcagttgtttcgattgcaggaactcgtactcatt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7190988 ctcttttttgagaaacctcaaccttgcacacaatagtttcttcggaaaaatcccacagaaactcggtcagttgtttcgattgcaggaactcgtactcatt 7191087  T
Q  303 gataactccttgacaggggagattcctacaaacttgacgagttgctctaatcttgaattcttatacttgactggaaatcatcttattggtaaaatac 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7191088 gataactccttgacaggggagattcctacaaacttgacgagttgctctaatcttgaattcttatacttgactggaaatcatcttattggtaaaatac 7191184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 4 - 399
Target Start/End: Complemental strand, 10654624 - 10654229
Alignment:
Q  4 agaccgataacttggcgttgctcaagttcaaagaatcaatatctaatgacccatatggaatcttggcctcttggaatagttcaactcacttctgcaagtg 103  Q
    |||| ||| |||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| || ||    
T  10654624 agacagattacttagcgttactcaaattcaaagaatcaatttctaatgacccatatggaatcttggcctcttggaatacttcaaatcactactgtaattg 10654525  T
Q  104 gtatggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatgttggcaatctc 203  Q
    | ||||||| ||||| | ||||||||||||||||||| | ||| || |||| || |||| | |  |||||||| | |||||||||||||| |||||||||    
T  10654524 gcatggaattacatgtaatcccatgcatcaaagagttacagagctagacttagatggatttaatttgcatggagtcatatctccccatgtaggcaatctc 10654425  T
Q  204 tcttttttgagaaacctcaaccttgcacacaatagtttcttcggaaaaatcccacagaaactcggtcagttgtttcgattgcaggaactcgtactcattg 303  Q
    |||||||||| |||||||| ||||||| | ||||||||||| ||||| ||||| ||  |||||||||||||||  ||||||||| ||||||| |||        
T  10654424 tcttttttgacaaacctcatccttgcaaaaaatagtttctttggaaatatccctcatgaactcggtcagttgtcacgattgcagcaactcgttctctcca 10654325  T
Q  304 ataactccttgacaggggagattcctacaaacttgacgagttgctctaatcttgaattcttatacttgactggaaatcatcttattggtaaaatac 399  Q
    |||||||  |||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |||  ||||||||||||| |||||||||||||    
T  10654324 ataactcaatgacaggggagattcctacaaacttgacaagttgctctgatcttgaatacttattcttatctggaaatcatctgattggtaaaatac 10654229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 3 - 370
Target Start/End: Complemental strand, 10662508 - 10662141
Alignment:
Q  3 gagaccgataacttggcgttgctcaagttcaaagaatcaatatctaatgacccatatggaatcttggcctcttggaatagttcaactcacttctgcaagt 102  Q
    ||||| ||| |||| ||||||||||| |||||||||||||||||||||||||| ||||  ||||||  ||||||||||| ||||||||||| |||||| |    
T  10662508 gagacggattacttagcgttgctcaaattcaaagaatcaatatctaatgacccgtatgagatcttgagctcttggaatacttcaactcactactgcaact 10662409  T
Q  103 ggtatggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatgttggcaatct 202  Q
    || | || ||  | || |||| |||||| |||||||||   |||||| |||| || |||||| |  |||||||||| |||||||||||||||||||||||    
T  10662408 ggcacgggattgcgtgtagtctcatgcaacaaagagttatagagttagacttagatggatataacttgcatggattcatatctccccatgttggcaatct 10662309  T
Q  203 ctcttttttgagaaacctcaaccttgcacacaatagtttcttcggaaaaatcccacagaaactcggtcagttgtttcgattgcaggaactcgtactcatt 302  Q
    ||||||||||| ||  |||||||||||| ||||||||||||| || |||||||||||  |||||||||  ||||| ||||||||||||||| |  | | |    
T  10662308 ctcttttttgataagtctcaaccttgcaaacaatagtttctttggtaaaatcccacatgaactcggtcgattgttccgattgcaggaactcttgattaat 10662209  T
Q  303 gataactccttgacaggggagattcctacaaacttgacgagttgctctaatcttgaattcttatactt 370  Q
     | |||||| |||||||||||||||||||||||||| | ||||||||| |||||||| ||||||||||    
T  10662208 aacaactccatgacaggggagattcctacaaacttgtcaagttgctctgatcttgaagtcttatactt 10662141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 19608270 - 19608034
Alignment:
Q  21 ttgctcaagttcaaagaatcaatatctaatgacccatatggaatcttggcctcttggaatagttcaactcacttctgcaagtggtatggaatcacatgca 120  Q
    |||||| | |||||||| |||||||| | ||||||| ||||| |||| |  ||||||||||||||||| ||||| ||||| ||| |||||||||||||||    
T  19608270 ttgctccaattcaaagattcaatatcaattgacccaaatggagtcttagattcttggaatagttcaacacacttttgcaattggcatggaatcacatgca 19608171  T
Q  121 gtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatgttggcaatctctcttttttgagaaacct 220  Q
    | ||||||||||||||||||   || || ||| |  |||||||| |  |||||||||  |||||| | ||| |||| |||||||||||| | |||||| |    
T  19608170 gccccatgcatcaaagagttatagaattgaacctacaaggatatgaattgcatggatcaatatctactcatattggtaatctctcttttctcagaaactt 19608071  T
Q  221 caaccttgcacacaatagtttcttcggaaaaatccca 257  Q
     ||||||||| | |||| |||||| ||||| ||||||    
T  19608070 aaaccttgcaaagaataatttctttggaaacatccca 19608034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 10719234 - 10719101
Alignment:
Q  90 cacttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctcccc 189  Q
    ||||||||||||||| |||||||||||||||| ||||||||| |||||||| | ||||| ||| | | |||||||| | | |||||||   |||||||||    
T  10719234 cacttctgcaagtggcatggaatcacatgcagccccatgcatgaaagagttacagagttgaacctaggaggatatctgttacatggatctttatctcccc 10719135  T
Q  190 atgttggcaatctctcttttttgagaaacctcaa 223  Q
    |||||||||||||||| ||||||| |||||||||    
T  10719134 atgttggcaatctctcctttttgataaacctcaa 10719101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 11050205 - 11050085
Alignment:
Q  93 ttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatg 192  Q
    |||||||||||| |||||||||||||||| | |||||||||||||||| |  |||| ||| | |||||||||||| |||||||||  ||||| ||| |||    
T  11050205 ttctgcaagtggcatggaatcacatgcagcctcatgcatcaaagagttacaaagttgaacctagaaggatatcagttgcatggatcaatatcaccctatg 11050106  T
Q  193 ttggcaatctctcttttttga 213  Q
    ||||||||||| |||||||||    
T  11050105 ttggcaatctcacttttttga 11050085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 277
Target Start/End: Complemental strand, 9838733 - 9838477
Alignment:
Q  21 ttgctcaagttcaaagaatcaatatctaatgacccatatggaatcttggcctcttggaatagttcaactcacttctgcaagtggtatggaatcacatgca 120  Q
    |||||| | ||||||||||||||||| | ||||||| ||||| |||| |  |||||||||  ||| |  ||||||||||| ||| |||||||||||||||    
T  9838733 ttgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatccacttctgcaactggcatggaatcacatgca 9838634  T
Q  121 gtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatgttggcaatctctcttttttgagaaacct 220  Q
      |||||||||||||||||| |  | || |||||  |||||||  || |||||||||  || || ||  |  ||||||||||||||  | | |||||| |    
T  9838633 accccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatggatccatgtcaccttacattggcaatctctctcgtataagaaacat 9838534  T
Q  221 caaccttgcacacaatagtttcttcggaaaaatcccacagaaactcggtcagttgtt 277  Q
    |||||||  | ||||||  ||||| |||||||| |||||| ||||||||| ||||||    
T  9838533 caaccttaaaaacaataccttctttggaaaaattccacaggaactcggtcggttgtt 9838477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 10598915 - 10599012
Alignment:
Q  43 tatctaatgacccatatggaatcttggcctcttggaatagttcaactcacttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagtt 140  Q
    |||||| |||||||||||| ||||| |  ||||||||||||||||||||||| ||||| ||| ||||||||| ||||| ||||| |||||||||||||    
T  10598915 tatctagtgacccatatggtatcttagattcttggaatagttcaactcacttttgcaattggcatggaatcatatgcaatcccaagcatcaaagagtt 10599012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 10749351 - 10749232
Alignment:
Q  90 cacttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctcccc 189  Q
    ||||||||||||||| |||||||||||||||  ||||||||| |||||||| |  |||| ||||| |||||||||||  | |||||||   |||| ||||    
T  10749351 cacttctgcaagtggcatggaatcacatgcaaacccatgcatgaaagagttacaaagttgaacttagaaggatatcatttacatggatctttatcacccc 10749252  T
Q  190 atgttggcaatctctctttt 209  Q
    |||||||||||||| |||||    
T  10749251 atgttggcaatctcactttt 10749232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 259
Target Start/End: Original strand, 10578827 - 10579049
Alignment:
Q  37 aatcaatatctaatgacccatatggaatcttggcctcttggaatagttcaactcacttctgcaagtggtatggaatcacatgcagtcccatgcatcaaag 136  Q
    |||||||||||| ||| |||||||| ||  | |  |||||||||  |||||| ||||| ||||| |||  |||||||  ||||||||||| |||||||||    
T  10578827 aatcaatatctagtgatccatatggtattctagattcttggaatgcttcaacccacttttgcaaatggcctggaatcgtatgcagtcccaagcatcaaag 10578926  T
Q  137 agttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatgttggcaatctctcttttttgagaaacctcaaccttgcacacaat 236  Q
    | || || |||||||  ||  ||||||  || |||||||||  ||||||||  ||||||||||||| |||  |||||||  ||||||||||| | |||||    
T  10578927 atttaccaagttaaagctgccaggataaaagttgcatggatccatatctccatatgttggcaatctttctcgtttgagattcctcaaccttggaaacaat 10579026  T
Q  237 agtttcttcggaaaaatcccaca 259  Q
     | |||| |||||| || |||||    
T  10579027 ggcttctacggaaacattccaca 10579049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 10590778 - 10590713
Alignment:
Q  75 tggaatagttcaactcacttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagtt 140  Q
    |||||||||||||||||||| ||||| ||| ||||||||| ||||||||||| |||||||||||||    
T  10590778 tggaatagttcaactcacttttgcaactggaatggaatcatatgcagtcccaagcatcaaagagtt 10590713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 275
Target Start/End: Complemental strand, 10765451 - 10765266
Alignment:
Q  90 cacttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctcccc 189  Q
    ||||| || |||||| |||||||||||||||| | |||||||||||| ||| | ||||| ||| | | |||||||||| | |||||||   ||||||||     
T  10765451 cacttttgaaagtggcatggaatcacatgcagcctcatgcatcaaagggttacagagttgaacctagcaggatatcagttacatggatctttatctccct 10765352  T
Q  190 atgttggcaatctctcttttttgagaaacctcaaccttgcacacaatagtttcttcggaaaaatcccacagaaactcggtcagttg 275  Q
    || |||| |||||| ||||| ||| ||| |||||||||  | |||||||||| |  ||| |||| |||||| |  |||||||||||    
T  10765351 atcttggtaatctcacttttctgataaatctcaaccttcaaaacaatagtttttctggagaaattccacaggagttcggtcagttg 10765266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 10602577 - 10602676
Alignment:
Q  41 aatatctaatgacccatatggaatcttggcctcttggaatagttcaactcacttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagtt 140  Q
    |||||||| ||| |||||||| ||| | |  ||||||||||||||||| ||||| ||||| ||| ||||||||| |||| |||||| |||||||||||||    
T  10602577 aatatctagtgatccatatggtatcctagattcttggaatagttcaacccacttttgcaaatggaatggaatcatatgcggtcccaagcatcaaagagtt 10602676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 10743038 - 10742988
Alignment:
Q  90 cacttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagtt 140  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  10743038 cacttctgcaagtggtatggaatcacatgcaaccccatgcatcaaagagtt 10742988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 356
Target Start/End: Original strand, 10593654 - 10593898
Alignment:
Q  112 tcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatgttggcaatctctctttttt 211  Q
    ||||||||| | ||| ||||||||||||| |  | ||||  ||  |||||||  || |||||||||  ||||||||  || ||||||||||| ||| | |    
T  10593654 tcacatgcaattccaagcatcaaagagttacaaaattaatgttacaaggatacaagttgcatggatatatatctccttatattggcaatctcacttgtat 10593753  T
Q  212 gagaaacctcaaccttgcacacaatagtttcttcggaaaaatcccacagaaactcggtcagttgtttcgattgcaggaactcgtactcattgataactcc 311  Q
     |||||||| ||||||| |  |||| ||||||| |||||||| |||||| || | || || ||||| | |||||||| |||  | |||| | |||||||     
T  10593754 aagaaaccttaaccttgaaagcaatggtttctttggaaaaattccacaggaattggggcaattgttacaattgcagggactttttctcagtaataactcg 10593853  T
Q  312 ttgacaggggagattcctacaaacttgacgagttgctctaatctt 356  Q
    || ||||| || || ||||| |||||||| | |||||| ||||||    
T  10593854 tttacaggagaaatccctacgaacttgacaaattgctccaatctt 10593898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 10664975 - 10664925
Alignment:
Q  70 cctcttggaatagttcaactcacttctgcaagtggtatggaatcacatgca 120  Q
    ||||||||||||||| ||| ||||||||||| ||| |||||||||||||||    
T  10664975 cctcttggaatagtttaacacacttctgcaattggcatggaatcacatgca 10664925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 258
Target Start/End: Original strand, 10562900 - 10563068
Alignment:
Q  90 cacttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagttgccgagtt-aaacttggaaggatatcagctgcatggattgatatctccc 188  Q
    ||||||||||||||| | |||||||| ||||  ||||||||||||||||||   ||||| || ||  |||| | ||||  | |||||||   ||||||||    
T  10562900 cacttctgcaagtggcagggaatcacttgcaaccccatgcatcaaagagttatagagttgaacctaagaagta-atcacttacatggatctttatctccc 10562998  T
Q  189 catgttggcaatctctcttttttgagaaacctcaaccttgcacacaatagtttcttcggaaaaatcccac 258  Q
     |||||||||||||| | ||||||| ||| ||| |||||| | |||||||||| |  ||| |||||||||    
T  10562999 tatgttggcaatctcacctttttgataaatctcgaccttggaaacaatagtttttctggagaaatcccac 10563068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 10609514 - 10609695
Alignment:
Q  21 ttgctcaagttcaaagaatcaatatctaatgacccatatggaatcttggcctcttggaatagttcaactcacttctgcaagtggtatggaatcacatgca 120  Q
    ||||| || ||||||||||||||||| ||||| ||| ||||| |||| |  |||||||||  ||| |  || || || ||||||  |||| |||||||||    
T  10609514 ttgcttaaattcaaagaatcaatatccaatgatccaaatggagtcttagattcttggaatttttccatccatttatgtaagtggcgtggagtcacatgca 10609613  T
Q  121 gtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatgttggcaatct 202  Q
    |  | ||||| |||||||||   ||||| ||| | |||||||||||| |||||||||  ||||| ||  |||| ||||||||    
T  10609614 gctctatgcaacaaagagttatagagttgaaccttgaaggatatcagttgcatggatccatatcaccatatgtaggcaatct 10609695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 293
Target Start/End: Original strand, 10556799 - 10556996
Alignment:
Q  96 tgcaagtggtatggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatgttg 195  Q
    ||||| |||||||||||||||||||   ||||||||||||||||| | ||||| || ||    |||||| || |||||||||   ||||| | |||| ||    
T  10556799 tgcaactggtatggaatcacatgcaacaccatgcatcaaagagttactgagttgaagttacctggatataagttgcatggatccttatcttctcatgctg 10556898  T
Q  196 gcaatctctcttttttgagaaacctcaaccttgcacacaatagtttcttcggaaaaatcccacagaaactcggtcagttgtttcgattgcaggaactc 293  Q
     ||||||  ||||| | ||| || ||||||||||| |||| |  ||||  ||||||||||| ||  |  | ||||||||||| | ||| |||||||||    
T  10556899 ccaatcttacttttctcagacacgtcaaccttgcagacaacaaattctctggaaaaatcccccaagagttgggtcagttgttacaattacaggaactc 10556996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 31469564 - 31469367
Alignment:
Q  15 ttggcgttgctcaagttcaaagaatcaatatctaatgacccatatggaatcttggcctcttggaatagttcaactcacttctgcaagtggtatggaatca 114  Q
    ||||| |||||||| ||||| ||||||||||| || ||| || || ||||||| | |||||||||||| || || || || ||||||||| |||||||||    
T  31469564 ttggcattgctcaaattcaaggaatcaatatccaaagactcaaatagaatcttagactcttggaatagctctacacaattttgcaagtggcatggaatca 31469465  T
Q  115 catgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatgttggcaatctctcttttttgag 214  Q
    ||||      |||| ||||||||||| | || || ||  | ||||||||| || |||||||||  ||||| ||  ||||||| ||||||||||||||||     
T  31469464 catg------catgaatcaaagagttacagaattgaaactagaaggatataagttgcatggatctatatcaccttatgttggtaatctctcttttttgac 31469371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 12897441 - 12897557
Alignment:
Q  93 ttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatg 192  Q
    |||||||||||| |||||||||||||||| ||||||||| || ||||| | ||||| | | |  || |||||||| | |||||||   ||||||||||||    
T  12897441 ttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttacagagttgagcctaaaaagatatcagttacatggatctttatctccccatg 12897540  T
Q  193 ttggcaatctctctttt 209  Q
    || |||||||| |||||    
T  12897541 tttgcaatctcactttt 12897557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 12905062 - 12905178
Alignment:
Q  93 ttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatg 192  Q
    |||||||||||| |||||||||||||||| ||||||||| || ||||| | ||||| | | | ||| |||||||| | |||||||   ||||||||||||    
T  12905062 ttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttacagagttgagcctagaaagatatcagttacatggatctttatctccccatg 12905161  T
Q  193 ttggcaatctctctttt 209  Q
    ||  ||||||| |||||    
T  12905162 tttccaatctcactttt 12905178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 12930149 - 12930268
Alignment:
Q  90 cacttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctcccc 189  Q
    ||||||||||||||| ||||||||||||| || ||||||||| || ||||| | ||||| | | |  || |||||||| | |||||||   |||||||||    
T  12930149 cacttctgcaagtggcatggaatcacatgtagccccatgcatgaacgagttacagagttgagcctaaaaagatatcagttacatggatctttatctcccc 12930248  T
Q  190 atgttggcaatctctctttt 209  Q
    ||||| |||||||| |||||    
T  12930249 atgtttgcaatctcactttt 12930268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 12946513 - 12946633
Alignment:
Q  89 tcacttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccc 188  Q
    |||||||||||||||| |||||||||||||||| ||||||||| || ||||| |  |||| |   | ||| |||||||| | |||||||   ||||||||    
T  12946513 tcacttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttacacagttgactctagaaagatatcagttacatggatctttatctccc 12946612  T
Q  189 catgttggcaatctctctttt 209  Q
    ||||||  ||||||| |||||    
T  12946613 catgtttccaatctcactttt 12946633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 12955954 - 12956070
Alignment:
Q  93 ttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatg 192  Q
    |||||||||||| | |||||||||||||| ||||||||| || ||||| | ||||| | | |  || |||||||| | |||||||   ||||||||||||    
T  12955954 ttctgcaagtggcaaggaatcacatgcagccccatgcatgaacgagttacagagttgagcctaaaaagatatcagttacatggatctttatctccccatg 12956053  T
Q  193 ttggcaatctctctttt 209  Q
    || |||||||| |||||    
T  12956054 tttgcaatctcactttt 12956070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 17925739 - 17925623
Alignment:
Q  93 ttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatg 192  Q
    |||||||||||| |||||||||||||||| ||||||||| || ||||| | ||||| | | |  || |||||||| | |||||||   ||||||||||||    
T  17925739 ttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttacagagttgagcctaaaaagatatcagttacatggatctttatctccccatg 17925640  T
Q  193 ttggcaatctctctttt 209  Q
    || |||||||| |||||    
T  17925639 tttgcaatctcactttt 17925623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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