View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_high_13 (Length: 411)
Name: NF17978_high_13
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 5466790 - 5466410
Alignment:
| Q |
20 |
taccggaatagaacaaaattaataatgaaatgtaacatagattttgttgtattgtttggacataattgtatgatgaagcataacaaaatttccgctttaa |
119 |
Q |
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| T |
5466790 |
taccggaatagaacaaaattaataacaaaatgtaacatagatttcgttgtattgtttggacataattgtatgacgaagcataacagaatttccgctttaa |
5466691 |
T |
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| Q |
120 |
atcggcagggatgcttcctcgcctaatagtctaattgcttgtctgacgaggtcagctaaaaggatgattatttttaagtgtaaactacatttttcgtata |
219 |
Q |
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| T |
5466690 |
atcggcagggatgcttcctcgcctaatagtctaattgtttgtctgacgaggtcagctaaaagaatgattatttttaagtataaactacatttttcgtata |
5466591 |
T |
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| Q |
220 |
ttcaaattaaaacttgatgattatgtatatgtttgatcgtagaatttgataatgtaattgatctatagcaaatccattttcttaataattttgatttagt |
319 |
Q |
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| T |
5466590 |
ttcaaattaaaacttgatgattatgtatatgtttgattgtagaatttgataatgtgattgatctatagcaaatccattttcttaataattttgatttaat |
5466491 |
T |
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| Q |
320 |
tgttttgttcaatcacattagaaattgcaatcaagaatcatgttgattgcattttatcatcgattcaatttgttgtatatt |
400 |
Q |
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| T |
5466490 |
tgttttgttaaatcacattagaaattgcaatcaacaatcatgttgattgcattttatcatcgattcaatttgttgtatatt |
5466410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 400
Target Start/End: Original strand, 4565659 - 4565705
Alignment:
| Q |
355 |
aatcatgttgattgca-ttttatcatcgattcaatttgttgtatatt |
400 |
Q |
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| T |
4565659 |
aatcatcttgattgcaattttatcatagattcaatttgttgtatatt |
4565705 |
T |
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