View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_high_14 (Length: 400)
Name: NF17978_high_14
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 3431269 - 3430931
Alignment:
| Q |
13 |
aatattatgagttagacatgatttatgaaatgtattaagcaacctttattacaatgttttctacccttatttctagaaaaacttgataacaccatggcat |
112 |
Q |
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| T |
3431269 |
aatattatgagttagacatgatttatgaaatgtattaagcaacctttattacaatgttttctacccttatttctagaaaaacttgataacaccatggcat |
3431170 |
T |
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| Q |
113 |
acatgtttgtcatatcatatgttctctaggctaataatggtcttagacaaattgccttgttattcagggctgacttttcgggacgaatatatgtcaaaag |
212 |
Q |
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| T |
3431169 |
acatgtttgtcatatcatatgttctctaggctaataatggtcttagacaaattgccttgttattcagggctgacttttcgggacgaatatatgtcaaaag |
3431070 |
T |
|
| Q |
213 |
ttgtaactgctctgagtcaacaagttcattgttgaataaggctttattactctttttgcatttttatttaaggtcatgctaacatgacactttgtaagga |
312 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3431069 |
ttgtaactgctccgagtcaacaagttcattgttgaataaggctttattactctttttgcatttttatttaaggtcatgctaacatgacactttgcaagga |
3430970 |
T |
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| Q |
313 |
ttcaaaattagatacagaattactactttaaatttggtc |
351 |
Q |
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| T |
3430969 |
ttcaaaattagatacataaggagtactttaaatttggtc |
3430931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 380
Target Start/End: Original strand, 36444130 - 36444168
Alignment:
| Q |
343 |
aatttggtcaaatgcatctaaagat-ttttaagtttttc |
380 |
Q |
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| T |
36444130 |
aatttggtcaaatgcatctaaagatcttttaagtttttc |
36444168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 28216869 - 28216906
Alignment:
| Q |
345 |
tttggtcaaatgcatctaaagatttttaagtttttcgt |
382 |
Q |
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| T |
28216869 |
tttggtcaaatgcatttaaagatctttaagtttttcgt |
28216906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 347 - 382
Target Start/End: Original strand, 3696964 - 3696999
Alignment:
| Q |
347 |
tggtcaaatgcatctaaagatttttaagtttttcgt |
382 |
Q |
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| T |
3696964 |
tggtcaaatgcatctaaagatctttaagtttttcgt |
3696999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 382
Target Start/End: Complemental strand, 19268763 - 19268726
Alignment:
| Q |
345 |
tttggtcaaatgcatctaaagatttttaagtttttcgt |
382 |
Q |
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||||||||||||||||||||| | |||||||||||||| |
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| T |
19268763 |
tttggtcaaatgcatctaaaggtctttaagtttttcgt |
19268726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 382
Target Start/End: Complemental strand, 42988548 - 42988514
Alignment:
| Q |
348 |
ggtcaaatgcatctaaagatttttaagtttttcgt |
382 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
42988548 |
ggtcaaatgcatctaaaggtttttaagtttttcgt |
42988514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 380
Target Start/End: Original strand, 26593190 - 26593220
Alignment:
| Q |
350 |
tcaaatgcatctaaagatttttaagtttttc |
380 |
Q |
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| T |
26593190 |
tcaaatgcatctaaagatttttaagtttttc |
26593220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 11133686 - 11133726
Alignment:
| Q |
342 |
aaatttggtcaaatgcatctaaagatttttaagtttttcgt |
382 |
Q |
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||||| |||||||||||||||||||| ||||| |||||||| |
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| T |
11133686 |
aaattaggtcaaatgcatctaaagatctttaaatttttcgt |
11133726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 18892561 - 18892529
Alignment:
| Q |
348 |
ggtcaaatgcatctaaagatttttaagtttttc |
380 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
18892561 |
ggtcaaatgcatctaaagatctttaagtttttc |
18892529 |
T |
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