View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17978_high_15 (Length: 397)
Name: NF17978_high_15
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 32377222 - 32377615
Alignment:
| Q |
1 |
caagtggactaagaataatgtacaatccagctgttgccggtgccgcaattgcaacggatatggcaattccaagttcaatggctggtctctcagatctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32377222 |
caagtggactaagaataatgtacaatccagctgttgccggtgccgcaattgcaacggatatggcaattccaagttcaatggctggtctctcagatctttt |
32377321 |
T |
|
| Q |
101 |
atatcctaaatttagactacaaactgcatattgagcaaaacagttaacatgaaggagaataacaactaccatcatatgtgcccattcacgaggcttagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32377322 |
atatcctaaatttagactacaaactgcatattgagcaaaacagttaacatgaaggagaataacaactaccatcatatgtgcccattcacgaggcttagaa |
32377421 |
T |
|
| Q |
201 |
gtaccatttttgcagaaaatcattctaagtgtagtaatatcatttggtctccatctacacaaaagaacaagatggtggaacctctttggatgattataca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32377422 |
gtaccatttttgcagaaaatcattctaagtgtagtaatatcatttgatctccatctacacaaaagaacaagatggtggaacctctttggatgattataca |
32377521 |
T |
|
| Q |
301 |
aagacattagtgtaaagagagcatttagtatttggttacttatttcaaaccatgtattcctctcagactttgtttttagcatatttttcgacat |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
32377522 |
aagacattagtgtaaagagagcatttagtatttggttacttatttcaaaccatgtattcctctcagactttgtttttagcacattattcaacat |
32377615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 32365537 - 32365930
Alignment:
| Q |
1 |
caagtggactaagaataatgtacaatccagctgttgccggtgccgcaattgcaacggatatggcaattccaagttcaatggctggtctctcagatctttt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||| |||||||||| |||||| | |||||||| | ||||||||||||||||||||||||| |
|
|
| T |
32365537 |
caagtggactaagaatagtgtacaatccagctattgccggtgctgcaattgcaatggatatagtaattccaactccaatggctggtctctcagatctttt |
32365636 |
T |
|
| Q |
101 |
atatcctaaatttagactacaaactgcatattgagcaaaacagttaacatgaaggagaataacaactaccatcatatgtgcccattcacgaggcttagaa |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
32365637 |
atatcctaaatttagactacaaagtgcatattgagcaaaacagttaacatgaaggagaataacaactaccatcatatgtgcccattcatgaggcttataa |
32365736 |
T |
|
| Q |
201 |
gtaccatttttgcagaaaatcattctaagtgtagtaatatcatttggtctccatctacacaaaagaacaagatggtggaacctctttggatgattataca |
300 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| || || |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32365737 |
gtaccatttttgcagtaaatcatcctaagtgcagaaacatcatttggtgtccatctacacaaaagaacaagatggtggaacctctttggatgaagataca |
32365836 |
T |
|
| Q |
301 |
aagacattagtgtaaagagagcatttagtatttggttacttatttcaaaccatgtattcctctcagactttgtttttagcatatttttcgacat |
394 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||| ||| |||| |
|
|
| T |
32365837 |
aacacattagtgtaaagagagcatttagtatttggttatttatttcaaaccatgtattcctctcagactttttttttagcacattattcaacat |
32365930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 76 - 361
Target Start/End: Original strand, 36122254 - 36122539
Alignment:
| Q |
76 |
caatggctggtctctcagatcttttatatcctaaatttagactacaaactgcatattgagcaaaacagttaacatgaaggagaataacaactaccatcat |
175 |
Q |
| |
|
||||||| || | ||||||||||||||| ||||| ||||||| |||| |||||| ||||| |||||||| |||||| |||||| || |||||||| || |
|
|
| T |
36122254 |
caatggccgggcgctcagatcttttataacctaagtttagaccgcaaagtgcatactgagcgaaacagttcacatgaccgagaattaccactaccattat |
36122353 |
T |
|
| Q |
176 |
atgtgcccattcacgaggcttagaagtaccatttttgcagaaaatcattctaagtgtagtaatatcatttggtctccatctacacaaaagaacaagatgg |
275 |
Q |
| |
|
||| ||||||| |||||||| |||| ||||| |||||| | | |||||||| | | ||||| |||| |||||| |||| ||| ||||| ||| |
|
|
| T |
36122354 |
gtgtttccattcatgaggcttataagttccattcttgcagtactcctttctaagtttggcgatatcttttgaattccatcggcacagaagtacaaggtgg |
36122453 |
T |
|
| Q |
276 |
tggaacctctttggatgattatacaaagacattagtgtaaagagagcatttagtatttggttacttatttcaaaccatgtattcct |
361 |
Q |
| |
|
| ||| ||| ||||| || |||||| |||| |||||||| |||||||| |||||||| || ||| ||||||||| | |||||| |
|
|
| T |
36122454 |
tagaataacttcggatgcttgtacaaacacatcagtgtaaacagagcattgagtatttgattgtttacttcaaaccacgcattcct |
36122539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University