View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_high_17 (Length: 379)
Name: NF17978_high_17
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_high_17 |
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| [»] chr3 (7 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 379
Target Start/End: Complemental strand, 5333468 - 5333101
Alignment:
| Q |
14 |
cataggcatcatctgaaatgtcttccagttcatcgagagcagccacacacttggtaaaagaacaattcaaggttacatgcgaagtcacaccctttctttt |
113 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| |
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| T |
5333468 |
cataagcatcatctgaaatgtcttctagttcatcgagagcatccacacacttggtaagagaacaatccgaggttacatgcgaagtcacaccctttctttt |
5333369 |
T |
|
| Q |
114 |
gaaactgtgcagctttgggacgtagctgaaatgatatatgcatatatcatcaatacaatatagcctatagaacaaaacagattggtttcccaacccactt |
213 |
Q |
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|||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5333368 |
gaaactgtgcagctttaggatgtacctgaaatgatatattcatatatcatcaatacaatatagcctatagaacaaaacagattggtttcccaaaccactt |
5333269 |
T |
|
| Q |
214 |
agaaa--agttgatttagtttgggtaacttttcaaacaacgttataagatattagataacaacataacaaacaggaaatcaaacaagattcttgaaacgt |
311 |
Q |
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||||| | || |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5333268 |
agaaatgaattcatttagtttggggaacttttcaaacaacgttataagatattagataacagcataacaaacaggaaatcaaacaagattcttgaaacgt |
5333169 |
T |
|
| Q |
312 |
tatattgagcgtgaaagaattattataaggtacaaacagaaacctagcatgaaacggtgcaaacaaat |
379 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| |||| |||| |
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| T |
5333168 |
tatattgagtgtgaaaaaattattataaggtacaaacagaaacctagcatgatacggttcaaataaat |
5333101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 353
Target Start/End: Original strand, 29518603 - 29518942
Alignment:
| Q |
14 |
cataggcatcatctgaaatgtcttccagttcatcgagagcagccacacacttggtaaaagaacaattcaaggttacatgcgaagtcacaccctttctttt |
113 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| |
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| T |
29518603 |
cataagcatcatctgaaatgtcttctagttcatcgagagcatccacacacttggtaagagaacaatccgaggttacatgcgaagtcacaccctttctttt |
29518702 |
T |
|
| Q |
114 |
gaaactgtgcagctttgggacgtagctgaaatgatatatgcatatatcatcaatacaatatagcctatagaacaaaacagattggtttcccaacccactt |
213 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29518703 |
gaaactgtgcagctttgggatgtacctgaaatgatatattcatatatcatcaatacaatatagcctatagaacaaaacagattggtttcccaaaccactt |
29518802 |
T |
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| Q |
214 |
agaaaagttgatttagtttgggtaacttttcaaacaacgttataagatattagataacaacataacaaacaggaaatcaaacaagattcttgaaacgtta |
313 |
Q |
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||||| || |||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29518803 |
agaaatattcatttagtttggggaacttttcaaacaacgttataagacattagataacagcataacaaacaggaaatcaaacaagattcttgaaacgtta |
29518902 |
T |
|
| Q |
314 |
tattgagcgtgaaagaattattataaggtacaaacagaaa |
353 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
29518903 |
tattgagcgtgaaagaattattataaggtacaaacagaaa |
29518942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 258 - 379
Target Start/End: Original strand, 38274752 - 38274873
Alignment:
| Q |
258 |
agatattagataacaacataacaaacaggaaatcaaacaagattcttgaaacgttatattgagcgtgaaagaattattataaggtacaaacagaaaccta |
357 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38274752 |
agatattagataacaacataataaacaggaaatcaaacaagattcttgaaacattatattgagcatgaaagaattattataaggtacaaacagaaaccta |
38274851 |
T |
|
| Q |
358 |
gcatgaaacggtgcaaacaaat |
379 |
Q |
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||| || ||||| ||||||||| |
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| T |
38274852 |
gcaagatacggttcaaacaaat |
38274873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 38274669 - 38274754
Alignment:
| Q |
97 |
gtcacaccctttcttttgaaactgtgcagctttgggacgtagctgaaatgatatatgcatatatcatcaatacaatatagcctataga |
184 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
38274669 |
gtcacaccctttcttttgaaactgtgcagctttgggatgtacctgaaatgatatatgc--atatcatcaataaaatatagcctataga |
38274754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 12835975 - 12835891
Alignment:
| Q |
14 |
cataggcatcatctgaaatgtcttccagttcatcgagagcagccacacacttggtaaaagaacaattcaaggttacatgcgaagt |
98 |
Q |
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|||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| | | |||||| ||||||| |
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| T |
12835975 |
cataggtatcatctgaaatgtcttctagtccatcgagagcagccacacacttggtaagagaacaatccgaagttacacgcgaagt |
12835891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 12835548 - 12835475
Alignment:
| Q |
97 |
gtcacaccctttcttttgaaactgtgcagctttgggacgtagctgaaatgatatatgcatatatcatcaatacaat |
172 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||| |
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| T |
12835548 |
gtcacaccatttattttgaaactgtgcagctttgggatgtacctgaaatgatatatgc--atatcatcaatacaat |
12835475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 38274463 - 38274534
Alignment:
| Q |
27 |
tgaaatgtcttccagttcatcgagagcagccacacacttggtaaaagaacaattcaaggttacatgcgaagt |
98 |
Q |
| |
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||||||||||| |||||||| |||||||||||||||||||||| |||||||| ||| |||||| ||||||| |
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| T |
38274463 |
tgaaatgtcttatagttcatcaagagcagccacacacttggtaagagaacaatccaaagttacacgcgaagt |
38274534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 10626265 - 10626349
Alignment:
| Q |
14 |
cataggcatcatctgaaatgtcttccagttcatcgagagcagccacacacttggtaaaagaacaattcaaggttacatgcgaagt |
98 |
Q |
| |
|
|||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||| |
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| T |
10626265 |
cataggtatcatctgaaatgtcttctagtccatcgagagcagccacacacttggtaagagaacaatccaaagttacacgcgaagt |
10626349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 21117091 - 21117175
Alignment:
| Q |
14 |
cataggcatcatctgaaatgtcttccagttcatcgagagcagccacacacttggtaaaagaacaattcaaggttacatgcgaagt |
98 |
Q |
| |
|
|||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||| |
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| T |
21117091 |
cataggtatcatctgaaatgtcttctagtccatcgagagcagccacacacttggtaagagaacaatccaaagttacacgcgaagt |
21117175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 10626668 - 10626728
Alignment:
| Q |
98 |
tcacaccctttcttttgaaactgtgcagctttgggacgtagctgaaatgatatatgcatat |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
10626668 |
tcacaccctttcttttgaaactgtgcagctttgggatgtacctgaaatgatatatgcatat |
10626728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 21117519 - 21117579
Alignment:
| Q |
98 |
tcacaccctttcttttgaaactgtgcagctttgggacgtagctgaaatgatatatgcatat |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
21117519 |
tcacaccctttcttttgaaactgtgcagctttgggatgtacctgaaatgatatatgcatat |
21117579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 1240598 - 1240659
Alignment:
| Q |
97 |
gtcacaccctttcttttgaaactgtgcagctttgggacgtagctgaaatgatatatgcatat |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
1240598 |
gtcacaccctttcttttgaaactgtgcagctttgggatgtacctgaaatgatatatgcatat |
1240659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 1240171 - 1240255
Alignment:
| Q |
14 |
cataggcatcatctgaaatgtcttccagttcatcgagagcagccacacacttggtaaaagaacaattcaaggttacatgcgaagt |
98 |
Q |
| |
|
|||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| | | |||||| ||||||| |
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| T |
1240171 |
cataggtatcatctgaaatgtcttctagtccatcgagagcagccacacacttggtaagagaacaatccgaagttacacgcgaagt |
1240255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 35487253 - 35487302
Alignment:
| Q |
330 |
attattataaggtacaaacagaaacctagcatgaaacggtgcaaacaaat |
379 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || || ||||||||| |
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|
| T |
35487253 |
attattataaggtaaaaacagaaacctagcatgataccgttcaaacaaat |
35487302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 35487201 - 35487245
Alignment:
| Q |
293 |
aacaagattcttgaaacgttatattgagcgtgaaagaattattat |
337 |
Q |
| |
|
||||||||||||||||| |||| ||||| |||||||||||||||| |
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|
| T |
35487201 |
aacaagattcttgaaaccttatcttgagtgtgaaagaattattat |
35487245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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