View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17978_high_30 (Length: 300)

Name: NF17978_high_30
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17978_high_30
NF17978_high_30
[»] chr5 (3 HSPs)
chr5 (2-292)||(26379900-26380198)
chr5 (1-157)||(36429633-36429789)
chr5 (1-157)||(5348067-5348223)
[»] chr4 (2 HSPs)
chr4 (1-157)||(27455271-27455427)
chr4 (27-157)||(49681708-49681838)
[»] chr8 (2 HSPs)
chr8 (1-157)||(20111904-20112061)
chr8 (1-157)||(14791021-14791177)
[»] scaffold0102 (1 HSPs)
scaffold0102 (1-157)||(32703-32859)
[»] chr6 (4 HSPs)
chr6 (1-157)||(30709844-30710000)
chr6 (1-157)||(17732434-17732590)
chr6 (1-157)||(15347776-15347932)
chr6 (1-157)||(6009053-6009203)
[»] chr3 (3 HSPs)
chr3 (1-157)||(47471044-47471200)
chr3 (1-157)||(50837877-50838033)
chr3 (1-157)||(54560377-54560533)
[»] chr2 (2 HSPs)
chr2 (1-157)||(10256048-10256204)
chr2 (1-157)||(4592969-4593119)
[»] chr7 (1 HSPs)
chr7 (1-157)||(36067666-36067822)
[»] chr1 (1 HSPs)
chr1 (1-157)||(47445400-47445556)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 2 - 292
Target Start/End: Complemental strand, 26380198 - 26379900
Alignment:
Q  2 tgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcatc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26380198 tgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgctgttgttaatgttattcatc 26380099  T
Q  102 ataaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtttgtgttgtgtt--tgatgaattcaaagggtttgattaattcaga 199  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  26380098 ataaaccttgttctttttccaacaagttcatgatcttttctgttattcattctgtttgtgttgtattgatgatgaattcaaagggtttgattaattcaga 26379999  T
Q  200 atttgagagatgaaaaggcaacaaaaaagagagagagtgtgcgaatcattagaaa------gtgtgtgtgtcagtagtagtggtcggtagtgtctgtgt 292  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||| |||||||      |||||||||||||||||||||||||||||||| |||||    
T  26379998 atttgagagatgaaaaggtaacaaacaagagagagagtgtgcgaatcgttagaaagtgtgtgtgtgtgtgtcagtagtagtggtcggtagtgtttgtgt 26379900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 36429789 - 36429633
Alignment:
Q  1 gtgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || || |||||||||  ||| |||||||    
T  36429789 gtgattgattctgaagaggagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccgttgctgttgatgttgttgtccatgctattcat 36429690  T
Q  101 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtt 157  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  36429689 cataaaccttgttctttttcaaacaagttcatgatcttttctattattcattttgtt 36429633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 5348223 - 5348067
Alignment:
Q  1 gtgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||| || || ||||| |||| ||| |||||||    
T  5348223 gtgattgattctgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatgttggtgttcatgctattcat 5348124  T
Q  101 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtt 157  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  5348123 cataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgtt 5348067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 27455427 - 27455271
Alignment:
Q  1 gtgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcat 100  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||| ||| |||||||    
T  27455427 gtgatttattctgaagaggagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccgttgttgttgatgttgttgttcatgctattcat 27455328  T
Q  101 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtt 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27455327 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattttgtt 27455271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 27 - 157
Target Start/End: Original strand, 49681708 - 49681838
Alignment:
Q  27 agtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcatcataaaccttgttctttttccaacaa 126  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||| || |||||||||| ||| |||||||||||||| ||||||||||||||||||    
T  49681708 agtgatgatggaacagtaacatcatgagaatgagaagaatcgttgttgttgatgttgttgttcatgctattcatcataaacgttgttctttttccaacaa 49681807  T
Q  127 gttcatgatcttttctattattcattctgtt 157  Q
     ||||||||||||| | ||||||||| ||||    
T  49681808 tttcatgatcttttatgttattcattatgtt 49681838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 20111904 - 20112061
Alignment:
Q  1 gtgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcat 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||| ||| |||||||    
T  20111904 gtgattgattttgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccgttgttgttgatgttgttgttcatgctattcat 20112003  T
Q  101 cat-aaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtt 157  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20112004 cataaaaccttgttctttttccaacaagttcatgatcttttctattattcattttgtt 20112061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 14791177 - 14791021
Alignment:
Q  1 gtgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||| || || ||||| |||| ||| |||||||    
T  14791177 gtgattgattctgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatgttggtgttcatgctattcat 14791078  T
Q  101 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtt 157  Q
    ||||| ||||||||||||||||||||||||||||| |||||| |||||| |||||||    
T  14791077 cataacccttgttctttttccaacaagttcatgatattttctgttattctttctgtt 14791021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 32859 - 32703
Alignment:
Q  1 gtgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcat 100  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || || |||||||||| ||| |||||||    
T  32859 gtgattgattctgaaaaggagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccgttgctgttgatgttgttgttcatgctattcat 32760  T
Q  101 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtt 157  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32759 cataaaccttgttctttttccaacaagttcatgatattttctattattcattctgtt 32703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 30710000 - 30709844
Alignment:
Q  1 gtgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || || |||||||||| ||| |||||||    
T  30710000 gtgattgattctgaagaggagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccgttgctgttgatgttgttgttcatgctattcat 30709901  T
Q  101 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtt 157  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  30709900 cataaaccttgttctttttcaaacaagttcatgatcttttctattattcattttgtt 30709844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 17732434 - 17732590
Alignment:
Q  1 gtgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||| || || ||||| |||| ||| |||||||    
T  17732434 gtgattgattctgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgctgttgatgttggtgttcatgctattcat 17732533  T
Q  101 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtt 157  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17732534 cataacccttgttctttttccaacaagttcatgatcttttctgttattcattctgtt 17732590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 15347932 - 15347776
Alignment:
Q  1 gtgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcat 100  Q
    |||||||||||| |||| ||||||||||||||||||||||| ||| ||||||||||||||||||| | ||| || || ||||| |||| ||| |||||||    
T  15347932 gtgattgattctaaagaggagacatgagtgatgatggaacaataatatcatgagaatgagaagaaacgttgatgttgatgttggtgttcatgctattcat 15347833  T
Q  101 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtt 157  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  15347832 cataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgtt 15347776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 6009053 - 6009203
Alignment:
Q  1 gtgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||      ||||||||||||||| ||||| || || ||||| |||| ||| |||||||    
T  6009053 gtgattgattctgaagaggagacatgagtgatgatggaacaata------tgagaatgagaagaaacattgatgttgatgttggtgttcatgctattcat 6009146  T
Q  101 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtt 157  Q
    ||||| |||||||||||||||||||||| || |||||||||| ||||||||| ||||    
T  6009147 cataacccttgttctttttccaacaagtccacgatcttttctgttattcattttgtt 6009203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 47471200 - 47471044
Alignment:
Q  1 gtgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || || |||||||||| ||| |||||||    
T  47471200 gtgattgattctgaagaggagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccgttgatgttgatgttgttgttcatgctattcat 47471101  T
Q  101 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtt 157  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47471100 tataaaccttgttctttttccaacaagttcatgatcttttctattattcattttgtt 47471044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 50837877 - 50838033
Alignment:
Q  1 gtgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||| || || ||||| |||| ||| |||||||    
T  50837877 gtgattgattctgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgctgttgatgttggtgttcatgctattcat 50837976  T
Q  101 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtt 157  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50837977 cataacccttgttctttttccaacaagttcatgatcttttctgttattcattctgtt 50838033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 54560533 - 54560377
Alignment:
Q  1 gtgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcat 100  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||| || || ||||| |||| ||| |||||||    
T  54560533 gtgattgattatgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatgttggtgttcatgctattcat 54560434  T
Q  101 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtt 157  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  54560433 cataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgtt 54560377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 10256204 - 10256048
Alignment:
Q  1 gtgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcat 100  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || || |||||||||| ||| |||||||    
T  10256204 gtgattgattctcaagaggagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccgttgctgttgatgttgttgttcatgctattcat 10256105  T
Q  101 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtt 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10256104 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattttgtt 10256048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 4593119 - 4592969
Alignment:
Q  1 gtgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcat 100  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||      ||| |||| ||| |||||||    
T  4593119 gtgattgattatgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatg------ttggtgttcatgctattcat 4593026  T
Q  101 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtt 157  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  4593025 cataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgtt 4592969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 36067822 - 36067666
Alignment:
Q  1 gtgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcat 100  Q
    |||||||||| |||||| ||||||||||| | ||||||||||||||||||||||||||||||||||| || ||| || |||||||||| ||| |||||||    
T  36067822 gtgattgattttgaagaggagacatgagttacgatggaacagtaacatcatgagaatgagaagaaccgttattgttgatgttgttgttcatgctattcat 36067723  T
Q  101 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtt 157  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36067722 cataaaccttgttctttttccaacaagttcatgatcttttctgttattcattctgtt 36067666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 47445400 - 47445556
Alignment:
Q  1 gtgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttgttgttgttaatgttattcat 100  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||| || || |||||||||| ||| |||||||    
T  47445400 gtgattgattctgaagaggagacatgagtggtgatggaacagtaacatcatgagaatgagaagaaccgttgctgttgatgttgttgttcatgctattcat 47445499  T
Q  101 cataaaccttgttctttttccaacaagttcatgatcttttctattattcattctgtt 157  Q
     |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  47445500 tataaaccttgttctttttccaacaagttcatgattttttctgttattcattctgtt 47445556  T

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