View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_high_32 (Length: 284)
Name: NF17978_high_32
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_high_32 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 45961374 - 45961633
Alignment:
| Q |
18 |
tgtataaattgcaaatccctaatatgaaaatataaaaactagtttgaattatggtaatgggttactgcattgattaatgaagatggtgttaatgaaagtt |
117 |
Q |
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| T |
45961374 |
tgtataaattgcaaatccctaatatgaaaatataaaaactagtttgaattatggtaatgggttaccgcattgattaatgaagatggtgttaatgaaagtt |
45961473 |
T |
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| Q |
118 |
gcatattatacgtactaaaattatataagcaaaggggatttgtaccgattttgatggtatcgacaaaataataatcagaacttttacagctagacagttc |
217 |
Q |
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| T |
45961474 |
gcatattatacgtactaaaattatataagcaaaggggatttgtaccgattttgatggtatcgacaaaataataatcagaacttttacagctagacagttc |
45961573 |
T |
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| Q |
218 |
atcagtaaattcataattcaaacagcccacactattcagtcaaattgaaccctacctttg |
277 |
Q |
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| T |
45961574 |
atcagtaaattcataattcaaacagcccacactattcagtcaaattgacccctatctttg |
45961633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 292469 - 292225
Alignment:
| Q |
20 |
tataaattgcaaatccctaatatgaaaatataaaaactagtttgaattatggtaatgggttactgcattgattaatgaagatggtgttaatgaaagttgc |
119 |
Q |
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| T |
292469 |
tataaattgcaaatcactaatatgaaaatataaaaactagtttgaattgtggtaatggattaca-------------aagacggtgttaatgaaagttgc |
292383 |
T |
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| Q |
120 |
atattatacgtactaaaattatataagcaaaggggatttgtaccgattttgatggtatcgacaaaataataatcagaacttttacagctagacagttcat |
219 |
Q |
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| T |
292382 |
atattatacgtactaaaattatataagcaaaggggatttgtaccgatttggatggtatcgacaaaataataatcagaacttttacagctagacagttcat |
292283 |
T |
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| Q |
220 |
cagtaaattcataattcaaacagcccacactattcagtcaaattgaaccctacctttg |
277 |
Q |
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| T |
292282 |
cggtaaattcataattcaaacagctcacactattcagtcaaattgaaccctatctttg |
292225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 33132502 - 33132540
Alignment:
| Q |
22 |
taaattgcaaatccctaatatgaaaatataaaaactagt |
60 |
Q |
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| T |
33132502 |
taaattacaaatcactaatatgaaaatataaaaactagt |
33132540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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