View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_high_34 (Length: 278)
Name: NF17978_high_34
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_high_34 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 47759857 - 47760116
Alignment:
| Q |
1 |
caacatcttggaatatctgagatagcaccatctaaacaattattgcaatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaa |
100 |
Q |
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| T |
47759857 |
caacaacttggaatatctgagatagcaccatctaaacaattattgcaatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaa |
47759956 |
T |
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| Q |
101 |
aattcaaatttacatcagttgcattatctgtagcaaatttacgacgagaatcacttgatgcagctttctctttcagtttcctcatcaagttcccaagaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47759957 |
aattcaaatttacatcagttgcattatctgtagcaaatttacgacgagaatcacttgatgcagctttctctttcagtttcctcatcaagttcccaagaac |
47760056 |
T |
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| Q |
201 |
ttggttaaattgatccacctctgttacattatatatgttccacatataaaactttggtga |
260 |
Q |
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| T |
47760057 |
ttggttaaattgatccacctctgttacattatatatgttccacatataaaactttggtga |
47760116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 47712949 - 47713201
Alignment:
| Q |
8 |
ttggaatatctgagatagcaccatctaaacaattattgcaatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattcaa |
107 |
Q |
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||||||| ||||| |||||| |||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
47712949 |
ttggaatttctgatatagcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaa |
47713048 |
T |
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| Q |
108 |
atttacatcagttgcattatctgtagcaaatttacgacgagaatcacttgatgcagctttctctttcagtttcctcatcaagttcccaagaatttggtta |
207 |
Q |
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| T |
47713049 |
attcacatcagttgcattatccgcagcaaacttaagacgagaatcacttgatgcagctatttctctcagtttcctcatcaagtttccaagaactcgatta |
47713148 |
T |
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| Q |
208 |
aattgatccacctctgttacattatatatgttccacatataaaactttggtga |
260 |
Q |
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| T |
47713149 |
aatggatccacctcggttacattgttcgggttcgacatataaaactttggtga |
47713201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 47717754 - 47717965
Alignment:
| Q |
10 |
ggaatatctgagatagcaccatctaaacaattattgcaatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattcaaat |
109 |
Q |
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| T |
47717754 |
ggaatttctgaaatagcacgctctaaacaatcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaa- |
47717852 |
T |
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| Q |
110 |
ttacatcagttgcattatctgtagcaaatttacgacgagaatcacttgatgcagctttctctttcagtttcctcatcaagttcccaagaatttggttaaa |
209 |
Q |
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| T |
47717853 |
--------gttgcattagcggtagcaaacttacgacgagaatcacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaa |
47717944 |
T |
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| Q |
210 |
ttgatccacctctgttacatt |
230 |
Q |
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|||||||||||| ||| |||| |
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| T |
47717945 |
ttgatccacctcggttgcatt |
47717965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 47745540 - 47745754
Alignment:
| Q |
7 |
cttggaatatctgagatagcaccatctaaacaattattgcaatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattca |
106 |
Q |
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|||||| | ||||| ||||||| |||||||||| |||||||||||| ||||||| |||||||| ||||| ||||||||||||||||||| |||||||| |
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| T |
47745540 |
cttggagtttctgaaatagcacgctctaaacaatcattgcaatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattca |
47745639 |
T |
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| Q |
107 |
aatttacatcagttgcattatctgtagcaaatttacgacgagaatcacttgatgcagctttctctttcagtttcctcatcaagttcccaagaatttggtt |
206 |
Q |
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| T |
47745640 |
aa---------gttgcattagcggtagcaaacttacgacgagaatcacctgatgcagctatttcattgagtttcctcatcaagttcccaagaacttgatt |
47745730 |
T |
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| Q |
207 |
aaattgatccacctctgttacatt |
230 |
Q |
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||||||| |||| || |||||||| |
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| T |
47745731 |
aaattgagccacatcggttacatt |
47745754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 6522027 - 6521987
Alignment:
| Q |
58 |
gacaaatcaggtgtgcactgaacaagaccatatatggtttg |
98 |
Q |
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| T |
6522027 |
gacaaatcaggtgtgcattgaacaagaccatatatggtttg |
6521987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 6506702 - 6506743
Alignment:
| Q |
58 |
gacaaatcaggtgtgcactgaacaagaccatatatggtttga |
99 |
Q |
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| T |
6506702 |
gacaaatcaggtgtgcattgaacaagagcaaatatggtttga |
6506743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 6512609 - 6512650
Alignment:
| Q |
58 |
gacaaatcaggtgtgcactgaacaagaccatatatggtttga |
99 |
Q |
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| T |
6512609 |
gacaaatcaggtgtgcattgaacaagagcatatatagtttga |
6512650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 47811779 - 47811738
Alignment:
| Q |
58 |
gacaaatcaggtgtgcactgaacaagaccatatatggtttga |
99 |
Q |
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|||||||||||||| |||||||||||||||| ||| |||||| |
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| T |
47811779 |
gacaaatcaggtgtacactgaacaagaccatttattgtttga |
47811738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 6517009 - 6517049
Alignment:
| Q |
59 |
acaaatcaggtgtgcactgaacaagaccatatatggtttga |
99 |
Q |
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| T |
6517009 |
acaaatcaggtgtgcattgagctagaccatatatggtttga |
6517049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 727 - 768
Alignment:
| Q |
58 |
gacaaatcaggtgtgcactgaacaagaccatatatggtttga |
99 |
Q |
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| T |
727 |
gacaaatcaggtgtgcattgaacaagagcaaatatggtttga |
768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 8380 - 8421
Alignment:
| Q |
58 |
gacaaatcaggtgtgcactgaacaagaccatatatggtttga |
99 |
Q |
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| T |
8380 |
gacaaatcaggtgtgcattgaacaagagcaaatatggtttga |
8421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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