View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_high_35 (Length: 272)
Name: NF17978_high_35
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_high_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 272
Target Start/End: Complemental strand, 35454538 - 35454300
Alignment:
| Q |
16 |
ttttgcattcccatggtcagcagtgactagataaattccacccactagctcaattgcatcaagaaaaatctgcaattacatatataaatacacagtattg |
115 |
Q |
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| T |
35454538 |
ttttgcattcccatggtcagcagtgactagataaattccacccactagctcaattgcatcaagaaaaatctgcaattacatatataaatacacagtattg |
35454439 |
T |
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| Q |
116 |
atgcaattagtagctatttaaccttcacttttaataggggaacccataaaatgaaagaattggactattttaatcacagcactgcattttaatcactgtc |
215 |
Q |
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| T |
35454438 |
atgcaattagtagctattta---------------------acccataaaatgaaagaattggactattttaatcacagcactgcattttaatcactgtc |
35454360 |
T |
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| Q |
216 |
agagaagaaattcacgag---caacaatgatagatatcatttaaaagcaaacattataga |
272 |
Q |
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| T |
35454359 |
agagaagaaattcacgagcaacaacaatgatagatatcatttaaaagcaaacattataga |
35454300 |
T |
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Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 27860613 - 27860708
Alignment:
| Q |
19 |
tgcattcccatggtcagcagtgactagataaattccacccactagctcaattgcatcaagaaaaatctgcaattacatatataaatacacagtatt |
114 |
Q |
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| T |
27860613 |
tgcattcccatggtcagcagtgactacataaattccacccacttgctcaattgcgtcaagaatcatctgcaattacatttataaatacacagtatt |
27860708 |
T |
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