View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_high_43 (Length: 234)
Name: NF17978_high_43
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_high_43 |
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| [»] scaffold1472 (1 HSPs) |
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| [»] scaffold0339 (2 HSPs) |
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Alignment Details
Target: scaffold1472 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: scaffold1472
Description:
Target: scaffold1472; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 533 - 313
Alignment:
| Q |
1 |
tattatttttgcatattttatataaacaagagaaagcctaaatttgaaatccaaacacacttaattttccaggtgtgaaccatctaaatcaagagaaggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
533 |
tattatttttgcatattttatataaacaagagaaagcctaaatttgaaatccaaacacacttaattttccaggtgtgaaccatctaaatcaagagaaggc |
434 |
T |
|
| Q |
101 |
ctaaacattgaacaagatgtctgaagatgaacatattttctgcattgtatgaagtttaattcctgattgaatgaaacacacctgatgaaaccaatgaagc |
200 |
Q |
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| T |
433 |
ctaaacattgaacaagatgtctgaagatgaacatattttctgcattgtatgaagtttaattcctgattgaatgaaacacacctgatgaaaccaatgaagc |
334 |
T |
|
| Q |
201 |
aagtgaagaattgaatgtgtc |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
333 |
aagtgaagaattgaatgtgtc |
313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: scaffold0339
Description:
Target: scaffold0339; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 16817 - 16597
Alignment:
| Q |
1 |
tattatttttgcatattttatataaacaagagaaagcctaaatttgaaatccaaacacacttaattttccaggtgtgaaccatctaaatcaagagaaggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16817 |
tattatttttgcatattttatataaacaagagaaagcctaaatttgaaatccaaacacacttaattttccaggtgtgaaccatctaaatcaagagaaggc |
16718 |
T |
|
| Q |
101 |
ctaaacattgaacaagatgtctgaagatgaacatattttctgcattgtatgaagtttaattcctgattgaatgaaacacacctgatgaaaccaatgaagc |
200 |
Q |
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| T |
16717 |
ctaaacattgaacaagatgtctgaagatgaacatattttctgcattgtatgaagtttaattcctgattgaatgaaacacacctgatgaaaccaatgaagc |
16618 |
T |
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| Q |
201 |
aagtgaagaattgaatgtgtc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
16617 |
aagtgaagaattgaatgtgtc |
16597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2456 - 2503
Alignment:
| Q |
1 |
tattatttttgcatattttatataaacaagagaaagcctaaatttgaa |
48 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2456 |
tattatttttgcatattttatataaacaagagaaagcctaaatttgaa |
2503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47273231 - 47273278
Alignment:
| Q |
1 |
tattatttttgcatattttatataaacaagagaaagcctaaatttgaa |
48 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47273231 |
tattatttttgcatattttatataaacaagagaaagcctaaatttgaa |
47273278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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