View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17978_high_44 (Length: 219)

Name: NF17978_high_44
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17978_high_44
NF17978_high_44
[»] chr7 (7 HSPs)
chr7 (90-204)||(34844124-34844239)
chr7 (134-204)||(21631275-21631345)
chr7 (91-204)||(37405495-37405607)
chr7 (134-204)||(21633006-21633076)
chr7 (135-204)||(21631045-21631114)
chr7 (137-204)||(21633236-21633303)
chr7 (134-204)||(29598018-29598088)
[»] chr1 (6 HSPs)
chr1 (94-204)||(902153-902262)
chr1 (91-204)||(3284576-3284688)
chr1 (91-204)||(9312103-9312215)
chr1 (91-204)||(3282875-3282987)
chr1 (99-204)||(9310494-9310598)
chr1 (92-125)||(33773164-33773197)
[»] chr4 (6 HSPs)
chr4 (90-204)||(51295235-51295349)
chr4 (134-204)||(5653218-5653288)
chr4 (90-204)||(24807496-24807609)
chr4 (90-125)||(52545225-52545260)
chr4 (133-204)||(18395689-18395759)
chr4 (91-125)||(8005866-8005900)
[»] chr6 (8 HSPs)
chr6 (91-204)||(15868466-15868578)
chr6 (90-204)||(14618996-14619108)
chr6 (91-204)||(15866654-15866766)
chr6 (91-204)||(33869320-33869432)
chr6 (92-204)||(33866174-33866285)
chr6 (133-204)||(24544733-24544804)
chr6 (90-204)||(14611156-14611268)
chr6 (90-125)||(14620573-14620608)
[»] scaffold0251 (1 HSPs)
scaffold0251 (91-204)||(6300-6412)
[»] chr2 (5 HSPs)
chr2 (134-195)||(20957729-20957790)
chr2 (134-194)||(20957557-20957617)
chr2 (90-125)||(25302771-25302806)
chr2 (91-125)||(41602412-41602446)
chr2 (93-122)||(25306769-25306798)
[»] chr5 (2 HSPs)
chr5 (135-204)||(39787104-39787173)
chr5 (132-195)||(33689980-33690043)
[»] scaffold0006 (1 HSPs)
scaffold0006 (90-125)||(39217-39252)
[»] chr3 (3 HSPs)
chr3 (90-125)||(35243952-35243987)
chr3 (90-125)||(35244126-35244161)
chr3 (90-122)||(41874471-41874503)


Alignment Details
Target: chr7 (Bit Score: 72; Significance: 6e-33; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 90 - 204
Target Start/End: Original strand, 34844124 - 34844239
Alignment:
Q  90 caactaaactctatatataggaacactcatgtatcacatctttt-atcttttatcaaatctagtttactattctatgagtcactatgagtatctccctca 188  Q
    ||||||||||||||||||||||||||||||||||||  ||  |  |||||||||||||||||||||||| | ||||||||||||||| ||||||||| ||    
T  34844124 caactaaactctatatataggaacactcatgtatcatttcaatccatcttttatcaaatctagtttactctactatgagtcactatgggtatctcccaca 34844223  T
Q  189 tgaatacacctatgct 204  Q
    ||||||||||||||||    
T  34844224 tgaatacacctatgct 34844239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 21631345 - 21631275
Alignment:
Q  134 atcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatgaatacacctatgct 204  Q
    |||||||||||||||||||||||| | ||||||||||||||| ||||||||| ||| ||||||||||||||    
T  21631345 atcttttatcaaatctagtttactctactatgagtcactatgggtatctcccacattaatacacctatgct 21631275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 37405607 - 37405495
Alignment:
Q  91 aactaaactctatatataggaacactcatgtatcacatcttttatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatg 190  Q
    |||||| |||||||||||||||||||  |||| | |||    |||||||| | |||||||||||||| | ||||||||||||||| ||||||||| ||||    
T  37405607 aactaatctctatatataggaacactattgta-ctcattcactatcttttgttaaatctagtttactctcctatgagtcactatgggtatctcccacatg 37405509  T
Q  191 aatacacctatgct 204  Q
    ||||||||||||||    
T  37405508 aatacacctatgct 37405495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 21633076 - 21633006
Alignment:
Q  134 atcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatgaatacacctatgct 204  Q
    |||||||||||||| ||| ||| | | ||||||||||||||| ||||||||| ||||||||||||||||||    
T  21633076 atcttttatcaaatatagattattctactatgagtcactatgtgtatctcccacatgaatacacctatgct 21633006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 21631114 - 21631045
Alignment:
Q  135 tcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatgaatacacctatgct 204  Q
    ||||||||| ||||||||||||| | ||||||||||||||| ||||||||| ||| |||| |||||||||    
T  21631114 tcttttatctaatctagtttactctactatgagtcactatgtgtatctcccacattaatagacctatgct 21631045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 21633303 - 21633236
Alignment:
Q  137 ttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatgaatacacctatgct 204  Q
    |||||| ||||||| |||||| | ||||| ||||||||||||||||||| |||||||||| |||||||    
T  21633303 ttttatgaaatctaatttactctactatgggtcactatgagtatctcccacatgaatacatctatgct 21633236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 29598088 - 29598018
Alignment:
Q  134 atcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatgaatacacctatgct 204  Q
    |||||||||||||||||||| | | | ||||||||| ||||| ||||||||| ||||||||| | ||||||    
T  29598088 atcttttatcaaatctagttcattctactatgagtctctatgggtatctcccacatgaatactcttatgct 29598018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 902153 - 902262
Alignment:
Q  94 taaactctatatataggaacactcatgtatcacatcttttatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatgaat 193  Q
    |||||||| |||||||||||||||||||||||  || || ||||||| | |||||||||||||| | ||||||||||||||| ||||||||| |||||||    
T  902153 taaactctctatataggaacactcatgtatcatttcatt-atcttttgttaaatctagtttactctcctatgagtcactatgggtatctcccacatgaat 902251  T
Q  194 acacctatgct 204  Q
    |||||||||||    
T  902252 acacctatgct 902262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 3284576 - 3284688
Alignment:
Q  91 aactaaactctatatataggaacactcatgtatcacatcttttatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatg 190  Q
    |||||| |||||||||||||||||||  |||| | |||    |||||||| | |||||||||||||| | ||||||||||||||| ||||||||| ||||    
T  3284576 aactaatctctatatataggaacactattgta-ctcattcactatcttttgttaaatctagtttactctcctatgagtcactatgggtatctcccacatg 3284674  T
Q  191 aatacacctatgct 204  Q
    ||||||||||||||    
T  3284675 aatacacctatgct 3284688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 9312103 - 9312215
Alignment:
Q  91 aactaaactctatatataggaacactcatgtatcacatcttttatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatg 190  Q
    |||||| |||||||||||||||||||  |||| | |||   ||||||||| | |||||||||||||| | | ||||||||||||||||||||||| ||||    
T  9312103 aactaatctctatatataggaacactattgta-ctcattcattatcttttgttaaatctagtttactctcccatgagtcactatgagtatctcccacatg 9312201  T
Q  191 aatacacctatgct 204  Q
    ||||||| ||||||    
T  9312202 aatacacatatgct 9312215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 3282875 - 3282987
Alignment:
Q  91 aactaaactctatatataggaacactcatgtatcacatcttttatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatg 190  Q
    |||||| |||||||||||||||||||  |||| | |||    |||||||| | |||||||||||||| | |||| |||||||||| ||||||||| ||||    
T  3282875 aactaatctctatatataggaacactattgta-ctcattcactatcttttgttaaatctagtttactctcctataagtcactatgggtatctcccacatg 3282973  T
Q  191 aatacacctatgct 204  Q
    ||||||||||||||    
T  3282974 aatacacctatgct 3282987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 9310494 - 9310598
Alignment:
Q  99 tctatatataggaacactcatgtatcacatcttttatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatgaatacacc 198  Q
    ||||||||||||||||||  |||| | |||   ||||||||| | ||||||| |||||| | ||||||||||||||| ||||||||| |||||||||||     
T  9310494 tctatatataggaacactattgta-ctcattcattatcttttgttaaatctaatttactctcctatgagtcactatgggtatctcccacatgaatacaca 9310592  T
Q  199 tatgct 204  Q
    ||||||    
T  9310593 tatgct 9310598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 33773164 - 33773197
Alignment:
Q  92 actaaactctatatataggaacactcatgtatca 125  Q
    ||||||||||||||||| ||||||||||||||||    
T  33773164 actaaactctatatataagaacactcatgtatca 33773197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 90 - 204
Target Start/End: Original strand, 51295235 - 51295349
Alignment:
Q  90 caactaaactctatatataggaacactcatgtatcacatcttttatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcat 189  Q
    |||||||||  |||||||||||||||| ||| ||||  |||  || |||||||||||||||||||||| |  ||||||||||||||  |||||||| |||    
T  51295235 caactaaacattatatataggaacactaatgcatcatttctactaccttttatcaaatctagtttactctattatgagtcactatggatatctcccacat 51295334  T
Q  190 gaatacacctatgct 204  Q
    |||||||||||||||    
T  51295335 gaatacacctatgct 51295349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 5653288 - 5653218
Alignment:
Q  134 atcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatgaatacacctatgct 204  Q
    |||||||||||||||||||||||| | |||||||||||| || ||||||||| ||||||||||||||||||    
T  5653288 atcttttatcaaatctagtttactctcctatgagtcactgtgggtatctcccacatgaatacacctatgct 5653218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 204
Target Start/End: Original strand, 24807496 - 24807609
Alignment:
Q  90 caactaaactctatatataggaacactcatgtatcacatcttttatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcat 189  Q
    |||||||| |||||||||||||||||||||||||||  ||  | ||||||||||||||||| || | | | ||||||||| |||||  |||||||| |||    
T  24807496 caactaaaatctatatataggaacactcatgtatcatttcaatcatcttttatcaaatcta-ttgattctcctatgagtctctatggatatctcccacat 24807594  T
Q  190 gaatacacctatgct 204  Q
    ||||||  |||||||    
T  24807595 gaatactactatgct 24807609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 52545260 - 52545225
Alignment:
Q  90 caactaaactctatatataggaacactcatgtatca 125  Q
    ||||||||||||||||||||||||||||||||||||    
T  52545260 caactaaactctatatataggaacactcatgtatca 52545225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 18395759 - 18395689
Alignment:
Q  133 tatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatgaatacacctatgct 204  Q
    |||||||||||| ||||| || ||||| |||||||||  |||||||||||||| ||||||||| | ||||||    
T  18395759 tatcttttatcatatcta-ttcactatactatgagtctatatgagtatctcccacatgaatactcttatgct 18395689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 8005866 - 8005900
Alignment:
Q  91 aactaaactctatatataggaacactcatgtatca 125  Q
    |||||| ||||||||||||||||||||||||||||    
T  8005866 aactaatctctatatataggaacactcatgtatca 8005900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 15868466 - 15868578
Alignment:
Q  91 aactaaactctatatataggaacactcatgtatcacatcttttatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatg 190  Q
    |||||| |||||||||||||||||||  |||| | |||   ||||||||| | |||||||||||||| | ||||||||||||||| ||||||||| ||||    
T  15868466 aactaatctctatatataggaacactattgta-ctcattcattatcttttgttaaatctagtttactctcctatgagtcactatgggtatctcccacatg 15868564  T
Q  191 aatacacctatgct 204  Q
    ||||||| ||||||    
T  15868565 aatacacatatgct 15868578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 90 - 204
Target Start/End: Original strand, 14618996 - 14619108
Alignment:
Q  90 caactaaactctatatataggaacactcatgtatcacatcttttatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcat 189  Q
    ||||||||||||||||||||||||||||||||||||  ||  ||||||||||||||||||| || | | | ||||||||| |||||  |||||||| |||    
T  14618996 caactaaactctatatataggaacactcatgtatcatttc-attatcttttatcaaatcta-ttgattctcctatgagtctctatggttatctcccacat 14619093  T
Q  190 gaatacacctatgct 204  Q
    ||||||  |||||||    
T  14619094 gaatactactatgct 14619108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 15866654 - 15866766
Alignment:
Q  91 aactaaactctatatataggaacactcatgtatcacatcttttatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatg 190  Q
    |||||| |||||||| ||||||||||  |||| | |||   ||||||||| | |||||||||||||| | ||||||||||||||| ||||||||| ||||    
T  15866654 aactaatctctatatttaggaacactattgta-ctcattcattatcttttgttaaatctagtttactctcctatgagtcactatgggtatctcccacatg 15866752  T
Q  191 aatacacctatgct 204  Q
    ||||||| ||||||    
T  15866753 aatacacatatgct 15866766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 33869320 - 33869432
Alignment:
Q  91 aactaaactctatatataggaacactcatgtatcacatcttttatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatg 190  Q
    |||||| |||||||||||||||||||  |||| | |||    |||||||| | |||||||||||||| | |||||||||||||||  |||||||| ||||    
T  33869320 aactaatctctatatataggaacactattgta-cgcattcactatcttttgttaaatctagtttactctcctatgagtcactatggatatctcccacatg 33869418  T
Q  191 aatacacctatgct 204  Q
    ||||||||||||||    
T  33869419 aatacacctatgct 33869432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 33866174 - 33866285
Alignment:
Q  92 actaaactctatatataggaacactcatgtatcacatcttttatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatga 191  Q
    ||||| |||||||||||||||||||  |||| | |||    |||||||| | |||||||||||||| | ||||| ||||||||| ||||||||| |||||    
T  33866174 actaatctctatatataggaacactattgta-ctcattcactatcttttgttaaatctagtttactctcctatgggtcactatgggtatctcccacatga 33866272  T
Q  192 atacacctatgct 204  Q
    |||||||||||||    
T  33866273 atacacctatgct 33866285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 24544733 - 24544804
Alignment:
Q  133 tatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatgaatacacctatgct 204  Q
    ||||||||||||||||||||||||| | ||||||||  ||||||||||||||||||||| ||| | ||||||    
T  24544733 tatcttttatcaaatctagtttactctactatgagtttctatgagtatctccctcatgagtactcttatgct 24544804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 204
Target Start/End: Original strand, 14611156 - 14611268
Alignment:
Q  90 caactaaactctatatataggaacactcatgtatcacatcttttatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcat 189  Q
    |||||||||||||||||||||||||||| |||||||  ||  |||||||||||||||| || || | ||| ||||||||| |||||  |||||||| |||    
T  14611156 caactaaactctatatataggaacactcgtgtatcatttc-attatcttttatcaaatata-ttgattatcctatgagtctctatggttatctcccacat 14611253  T
Q  190 gaatacacctatgct 204  Q
    ||||||  |||||||    
T  14611254 gaatactactatgct 14611268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 14620573 - 14620608
Alignment:
Q  90 caactaaactctatatataggaacactcatgtatca 125  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14620573 caactaaactctatatataggaaaactcatgtatca 14620608  T

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Target: scaffold0251 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 6300 - 6412
Alignment:
Q  91 aactaaactctatatataggaacactcatgtatcacatcttttatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatg 190  Q
    |||||| |||||||||||||||||||  |||| | |||    |||||||| | ||||| |||||||| | ||||||||||||||| ||||||||| ||||    
T  6300 aactaatctctatatataggaacactattgta-ctcattcactatcttttgttaaatcaagtttactctcctatgagtcactatgggtatctcccacatg 6398  T
Q  191 aatacacctatgct 204  Q
    |||||| |||||||    
T  6399 aatacatctatgct 6412  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 20957729 - 20957790
Alignment:
Q  134 atcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatgaatac 195  Q
    ||||||| |||||||||||||||| | ||||||||||||||| ||||||||| |||||||||    
T  20957729 atcttttgtcaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 20957790  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 20957557 - 20957617
Alignment:
Q  134 atcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatgaata 194  Q
    ||||||| |||||||||||||||| | ||||||||||||||| ||||||||| ||||||||    
T  20957557 atcttttgtcaaatctagtttactctactatgagtcactatgggtatctcccacatgaata 20957617  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 25302771 - 25302806
Alignment:
Q  90 caactaaactctatatataggaacactcatgtatca 125  Q
    |||||||||||||||||||||| |||||||||||||    
T  25302771 caactaaactctatatataggatcactcatgtatca 25302806  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 41602412 - 41602446
Alignment:
Q  91 aactaaactctatatataggaacactcatgtatca 125  Q
    ||||||| |||||||||||||||||||||||||||    
T  41602412 aactaaattctatatataggaacactcatgtatca 41602446  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 122
Target Start/End: Original strand, 25306769 - 25306798
Alignment:
Q  93 ctaaactctatatataggaacactcatgta 122  Q
    ||||||||||||||||||||||||||||||    
T  25306769 ctaaactctatatataggaacactcatgta 25306798  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 39787173 - 39787104
Alignment:
Q  135 tcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatgaatacacctatgct 204  Q
    |||||| | |||||||||||||| | |||| |||||||||| ||||||||| ||||||||||| ||||||    
T  39787173 tcttttgttaaatctagtttactctcctataagtcactatgggtatctcccacatgaatacacatatgct 39787104  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 33689980 - 33690043
Alignment:
Q  132 ttatcttttatcaaatctagtttactattctatgagtcactatgagtatctccctcatgaatac 195  Q
    ||||||||||||||||||| || ||| |  |||||||| ||||| ||||||||| |||||||||    
T  33689980 ttatcttttatcaaatctaattcactctattatgagtctctatgggtatctcccacatgaatac 33690043  T

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Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 39217 - 39252
Alignment:
Q  90 caactaaactctatatataggaacactcatgtatca 125  Q
    ||||||||||||||||||||||||||||||||||||    
T  39217 caactaaactctatatataggaacactcatgtatca 39252  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 35243987 - 35243952
Alignment:
Q  90 caactaaactctatatataggaacactcatgtatca 125  Q
    ||||||||||||||||||||||||||||||||||||    
T  35243987 caactaaactctatatataggaacactcatgtatca 35243952  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 35244126 - 35244161
Alignment:
Q  90 caactaaactctatatataggaacactcatgtatca 125  Q
    ||||||||||||||||||||||||||||||||||||    
T  35244126 caactaaactctatatataggaacactcatgtatca 35244161  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 41874471 - 41874503
Alignment:
Q  90 caactaaactctatatataggaacactcatgta 122  Q
    |||||||||||||||||||||||||||||||||    
T  41874471 caactaaactctatatataggaacactcatgta 41874503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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