View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_high_45 (Length: 217)
Name: NF17978_high_45
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 51767070 - 51767261
Alignment:
| Q |
8 |
ggaggagcacagacattgtatcttaagagatggagcacccatgttcttggagaagggaatcacaaaatcatttccatgtgcatccacatcattctacatt |
107 |
Q |
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| T |
51767070 |
ggaggaccacaaacattgtatcttaagagatggagcacccatgttcttggagaagggaatcacaaaatcatttccatgtgcatccacatcattctacatt |
51767169 |
T |
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| Q |
108 |
gactattgtattttccaaatggaccatgtttttagagggaggccatgcatacaagttatgtatcataaagttagctttctgacagggctatg |
199 |
Q |
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| T |
51767170 |
gactattgtattttccaaatggaccatgtttttagagggaggccatgcatacaagttatgtatcataaagttagctttctgacagggctatg |
51767261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 51755411 - 51755455
Alignment:
| Q |
113 |
ttgtattttccaaatggaccatgtttttagagggaggccatgcat |
157 |
Q |
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| T |
51755411 |
ttgtattttccaaatggaccttgttttcaaagggaggccttgcat |
51755455 |
T |
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