View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17978_high_9 (Length: 487)

Name: NF17978_high_9
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17978_high_9
NF17978_high_9
[»] chr7 (13 HSPs)
chr7 (1-472)||(23071368-23071837)
chr7 (10-376)||(47261529-47261895)
chr7 (379-469)||(23072050-23072140)
chr7 (379-452)||(23072346-23072419)
chr7 (379-472)||(8356238-8356331)
chr7 (378-472)||(3958374-3958468)
chr7 (374-471)||(17944560-17944657)
chr7 (385-472)||(25193994-25194081)
chr7 (378-472)||(13789524-13789618)
chr7 (379-428)||(7734371-7734420)
chr7 (379-470)||(3958082-3958172)
chr7 (377-470)||(7741755-7741848)
chr7 (379-459)||(37223547-37223627)
[»] chr5 (14 HSPs)
chr5 (10-376)||(9718262-9718628)
chr5 (10-376)||(15928335-15928701)
chr5 (379-469)||(36975926-36976016)
chr5 (379-472)||(10567339-10567432)
chr5 (379-472)||(36975237-36975330)
chr5 (379-469)||(22586996-22587086)
chr5 (379-472)||(15173483-15173576)
chr5 (10-296)||(23284255-23284541)
chr5 (379-428)||(36976219-36976268)
chr5 (379-470)||(10321602-10321693)
chr5 (379-470)||(22599091-22599182)
chr5 (403-466)||(39569950-39570013)
chr5 (379-471)||(16253754-16253846)
chr5 (379-466)||(32064427-32064515)
[»] chr1 (11 HSPs)
chr1 (10-376)||(1803023-1803389)
chr1 (379-471)||(31412421-31412513)
chr1 (373-472)||(9448651-9448750)
chr1 (54-296)||(4976516-4976758)
chr1 (10-296)||(23182920-23183206)
chr1 (379-472)||(32024950-32025043)
chr1 (379-472)||(32025246-32025339)
chr1 (379-472)||(32025542-32025635)
chr1 (374-473)||(51865803-51865902)
chr1 (379-468)||(4119115-4119204)
chr1 (379-475)||(50013652-50013748)
[»] chr4 (14 HSPs)
chr4 (10-304)||(2244809-2245103)
chr4 (376-469)||(19987642-19987735)
chr4 (379-472)||(19987939-19988032)
chr4 (54-296)||(10430261-10430503)
chr4 (379-471)||(38978713-38978805)
chr4 (107-296)||(54780566-54780757)
chr4 (379-472)||(8107441-8107534)
chr4 (397-474)||(7833780-7833857)
chr4 (381-471)||(11028757-11028846)
chr4 (379-464)||(8107169-8107254)
chr4 (303-377)||(2244676-2244747)
chr4 (410-469)||(56101095-56101154)
chr4 (379-428)||(41206465-41206514)
chr4 (393-469)||(17770988-17771064)
[»] chr2 (14 HSPs)
chr2 (381-472)||(26533280-26533371)
chr2 (379-472)||(26533574-26533668)
chr2 (378-472)||(38144013-38144107)
chr2 (379-472)||(44279301-44279394)
chr2 (393-472)||(31074228-31074307)
chr2 (379-472)||(44279004-44279098)
chr2 (411-472)||(8596491-8596552)
chr2 (379-472)||(21089075-21089168)
chr2 (105-296)||(40448668-40448861)
chr2 (379-464)||(27187228-27187313)
chr2 (379-428)||(27187488-27187537)
chr2 (379-464)||(27836770-27836855)
chr2 (379-464)||(27837042-27837127)
chr2 (379-428)||(27837302-27837351)
[»] scaffold0251 (1 HSPs)
scaffold0251 (379-472)||(12600-12693)
[»] scaffold0007 (1 HSPs)
scaffold0007 (379-472)||(262120-262213)
[»] chr6 (6 HSPs)
chr6 (379-472)||(30045446-30045539)
chr6 (379-472)||(32729551-32729644)
chr6 (386-472)||(1702187-1702273)
chr6 (379-471)||(1701909-1702001)
chr6 (416-460)||(29141559-29141603)
chr6 (410-470)||(33447672-33447732)
[»] chr8 (13 HSPs)
chr8 (10-292)||(45473309-45473591)
chr8 (379-464)||(21397237-21397322)
chr8 (379-464)||(21791730-21791815)
chr8 (379-466)||(34074291-34074378)
chr8 (379-472)||(15937837-15937930)
chr8 (379-472)||(34373624-34373717)
chr8 (394-472)||(34373920-34373998)
chr8 (379-451)||(9410526-9410598)
chr8 (379-462)||(22576649-22576729)
chr8 (379-470)||(21403280-21403368)
chr8 (379-470)||(21797773-21797861)
chr8 (378-472)||(21008447-21008541)
chr8 (393-433)||(24731136-24731176)
[»] chr3 (6 HSPs)
chr3 (89-296)||(54577251-54577460)
chr3 (379-472)||(3870796-3870889)
chr3 (379-463)||(19997100-19997184)
chr3 (381-428)||(7400837-7400884)
chr3 (437-472)||(7407882-7407917)
chr3 (378-466)||(2706539-2706627)


Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 23071368 - 23071837
Alignment:
Q  1 accaatatgcaatcactaaaacactcattttttaattgggcattaccaaccaatcttttataaaccttacaacaaaaacagcatactctctataaaactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  ||||||||||| |||||     
T  23071368 accaatatgcaatcactaaaacactcattttttaattgggcattactaaccaatcttttataaaccttacaacaaaaagataatactctctatcaaactc 23071467  T
Q  101 tttcgcataaacaagtcaatagctatcgtacttttctccatttggtaaatctctagtgttcaaattagccgtaaaccgtttagaaaattcatctctagaa 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||    
T  23071468 tttcgcataaacaagccaatagctatcgtacttttctccatttggtaaatctccagtgttcaaattagctctaaaccgtttagaaaattcatctctagaa 23071567  T
Q  201 ccctttacaatggacaaatctctttggaccttttgtgactaataagtcaatcattttagaatcaagagtatcctaattttttggatcaaatatatcaaag 300  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||    
T  23071568 cccttcacaatggacaagtctctttggaccttttgtgactaataagtcaatcattttagaatcaagagcatcctaattttttggatcaaatatatc--ag 23071665  T
Q  301 aaattattcaaattaacatcatcaataatgggcacatcacctctatttttcggatcaacactttcattctccatattttgttaggagtccctcatcgagt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23071666 aaattattcaaattaacatcatcaataatgggcacatcacctctatttttctgatcaacactttcattctccatattttgttaggagtccctcatcgagt 23071765  T
Q  401 agatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23071766 agatcaaaatgtttgatgtggtacttaaaccatgaagttctcccacctattggactagtcttttgggttggg 23071837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 47261529 - 47261895
Alignment:
Q  10 caatcactaaaacactcattttttaattgggcattaccaaccaatcttttataaaccttacaacaaaaacagcatactctctataaaactttttcgcata 109  Q
    ||||||||||||| ||||||| |||||||  ||||||||||| ||||||||||||| ||||||||||||||  |||||||  || || || ||| | |||    
T  47261529 caatcactaaaaccctcatttgttaattgaccattaccaacccatcttttataaactttacaacaaaaacaaaatactct--atcaagctctttggaata 47261626  T
Q  110 aacaagtcaatagctatcgtacttttctccatttggtaaatctctagtgttcaaattagccgtaaaccgtttagaaaattcatctctagaaccctttaca 209  Q
    |||||| ||||  |||||  |||| ||||||||||||||| ||||||| | ||||||||||||||| ||| |||| | || |||||||| ||||||||||    
T  47261627 aacaagccaatctctatcacacttctctccatttggtaaaactctagtatacaaattagccgtaaaacgtctagacagtttatctctaggaccctttaca 47261726  T
Q  210 atggacaaatctcttt--ggaccttttgtgactaataagtcaatcattttagaatcaagagtatcctaattttttggatcaaatatatcaaagaaattat 307  Q
    | ||||||||||||||  ||||| ||  |  |||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||    
T  47261727 acggacaaatctcttttaggaccattcatagctaataagtcaatcattttagaatcaagagcatcccaatttcttggatcaaatatatcaaggaaattat 47261826  T
Q  308 tcaaattaacatcatcaataatgggcacatcacctctatttttcggatcaacactttcattctccatat 376  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  47261827 tcaaattaacatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatat 47261895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 379 - 469
Target Start/End: Original strand, 23072050 - 23072140
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggtt 469  Q
    ||||||||||||| ||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||  ||||||||||    
T  23072050 tgttaggagtcccacatcgagtagatcaaaatgcttaatgtgatacttaaaccatgaagttctcccacctattggactacacttttgggtt 23072140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 379 - 452
Target Start/End: Original strand, 23072346 - 23072419
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattg 452  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  23072346 tgttaggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaaaccatgaagttctcccacctattg 23072419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 379 - 472
Target Start/End: Complemental strand, 8356331 - 8356238
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||||| ||||||||| |||||| || ||||||||||| |||| || ||| |||||||||||||| |||||||| ||||||||||||    
T  8356331 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctataggactagttttttgggttggg 8356238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 472
Target Start/End: Complemental strand, 3958468 - 3958374
Alignment:
Q  378 ttgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    |||||||||||| | |||||||||||||||| |  ||||||||||| ||||  ||||| ||||||||| |||| ||||||||||||||| |||||    
T  3958468 ttgttaggagtctcacatcgagtagatcaaagtacttgatgtggtacttaagtcatgaggttctcccatctataggactagtcttttggattggg 3958374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 471
Target Start/End: Original strand, 17944560 - 17944657
Alignment:
Q  374 tattttgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttgg 471  Q
    |||| ||||||||||||| |||||||||||| ||| || | ||||||||| |||| |||||| | ||||||| ||| |||||||||||||| ||||||    
T  17944560 tattctgttaggagtcccacatcgagtagataaaagtgctcgatgtggtacttaagccatgaggctctcccatctaatggactagtctttttggttgg 17944657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 385 - 472
Target Start/End: Original strand, 25193994 - 25194081
Alignment:
Q  385 gagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||| ||||| ||| || |||||||||||||||||| |||| |||||| | ||| ||||||| |||| |||||||||||||||||    
T  25193994 gagtcccacatcgggtaaataaaaatgtttgatgtggtacttaagccatgaggctcttccacctaatggattagtcttttgggttggg 25194081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 472
Target Start/End: Complemental strand, 13789618 - 13789524
Alignment:
Q  378 ttgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    |||||||||||||| ||||| |||  | ||| || ||||||||||| |||| |||||  | ||||||||||||||||||||| |||| |||||||    
T  13789618 ttgttaggagtcccacatcgggtaactaaaagtgcttgatgtggtacttaagccatggggctctcccacctattggactagttttttaggttggg 13789524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 428
Target Start/End: Complemental strand, 7734420 - 7734371
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaa 428  Q
    ||||||||||||  |||||||||||| |||||| ||||||||||||||||    
T  7734420 tgttaggagtcctacatcgagtagataaaaatgcttgatgtggtatttaa 7734371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 470
Target Start/End: Complemental strand, 3958172 - 3958082
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttg 470  Q
    ||||||||||||| | |||||||||||||  |  |||||||| || ||||   |||| |||||||||||||| |||||||||||||| ||||    
T  3958172 tgttaggagtcccacgtcgagtagatcaag-tacttgatgtgatacttaagttatgaggttctcccacctataggactagtcttttgagttg 3958082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 470
Target Start/End: Complemental strand, 7741848 - 7741755
Alignment:
Q  377 tttgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttg 470  Q
    ||||||||||||||| ||| || ||||| ||| || |||||||| |||| || | |||| | ||||| | ||| |||| |||||||||||||||    
T  7741848 tttgttaggagtcccgcattgaatagataaaagtgattgatgtgatattcaagcaatgatgctctcctagctaatggattagtcttttgggttg 7741755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 459
Target Start/End: Original strand, 37223547 - 37223627
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagt 459  Q
    ||||||||||||| ||| |||||| | || |||||  |||||||| |||| |||| | | ||||||||||| |||||||||    
T  37223547 tgttaggagtcccacattgagtagttaaatatgttcaatgtggtacttaagccattaggctctcccacctaatggactagt 37223627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 10 - 376
Target Start/End: Complemental strand, 9718628 - 9718262
Alignment:
Q  10 caatcactaaaacactcattttttaattgggcattaccaaccaatcttttataaaccttacaacaaaaacagcatactctctataaaactttttcgcata 109  Q
    ||||||||||||| ||||||| |||||||  ||||||||||| ||||||||||||| ||||||||||||||  |||||||  || || || ||| | |||    
T  9718628 caatcactaaaaccctcatttgttaattgaccattaccaacccatcttttataaactttacaacaaaaacaaaatactct--atcaagctctttggaata 9718531  T
Q  110 aacaagtcaatagctatcgtacttttctccatttggtaaatctctagtgttcaaattagccgtaaaccgtttagaaaattcatctctagaaccctttaca 209  Q
    |||||| ||||  |||||  |||| ||||||||||||||| ||||||| | ||||||||||||||| ||| |||| | || |||||||| ||||||||||    
T  9718530 aacaagccaatctctatcacacttctctccatttggtaaaactctagtatacaaattagccgtaaaacgtctagacagtttatctctaggaccctttaca 9718431  T
Q  210 atggacaaatctcttt--ggaccttttgtgactaataagtcaatcattttagaatcaagagtatcctaattttttggatcaaatatatcaaagaaattat 307  Q
    | ||||||||||||||  ||||| ||  |  |||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||    
T  9718430 acggacaaatctcttttaggaccattcatagctaataagtcaatcattttagaatcaagagcatcccaatttcttggatcaaatatatcaaggaaattat 9718331  T
Q  308 tcaaattaacatcatcaataatgggcacatcacctctatttttcggatcaacactttcattctccatat 376  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  9718330 tcaaattaacatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatat 9718262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 10 - 376
Target Start/End: Complemental strand, 15928701 - 15928335
Alignment:
Q  10 caatcactaaaacactcattttttaattgggcattaccaaccaatcttttataaaccttacaacaaaaacagcatactctctataaaactttttcgcata 109  Q
    ||||||||||||| ||||||| |||||||  ||||||||||| ||||||||||||| ||||||||||||||  |||||||  || || || ||| | |||    
T  15928701 caatcactaaaaccctcatttgttaattgaccattaccaacccatcttttataaactttacaacaaaaacaaaatactct--atcaagctctttggaata 15928604  T
Q  110 aacaagtcaatagctatcgtacttttctccatttggtaaatctctagtgttcaaattagccgtaaaccgtttagaaaattcatctctagaaccctttaca 209  Q
    |||||| ||||  |||||  |||| ||||||||||||||| ||||||| | |||||||| |||||| ||| |||||| || |||||||| ||||||||||    
T  15928603 aacaagccaatctctatcacacttctctccatttggtaaaactctagtatacaaattagtcgtaaaacgtctagaaagtttatctctaggaccctttaca 15928504  T
Q  210 atggacaaatctcttt--ggaccttttgtgactaataagtcaatcattttagaatcaagagtatcctaattttttggatcaaatatatcaaagaaattat 307  Q
    | ||||||||||||||  ||||| ||  |  |||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||    
T  15928503 acggacaaatctcttttaggaccattcatagctaataagtcaatcattttagaatcaagagcatcccaatttcttggatcaaatatatcaaggaaattat 15928404  T
Q  308 tcaaattaacatcatcaataatgggcacatcacctctatttttcggatcaacactttcattctccatat 376  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  15928403 tcaaattaacatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatat 15928335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 379 - 469
Target Start/End: Original strand, 36975926 - 36976016
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggtt 469  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||  ||| | | |||||||||| ||||||||||||||||||||    
T  36975926 tgttaggagtcccacatcgagtagatcaaagtgtttgatgtggtatttaagtcataaggctctcccacctgttggactagtcttttgggtt 36976016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 472
Target Start/End: Original strand, 10567339 - 10567432
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||||| ||| ||||| |||||| || |||||||| || ||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  10567339 tgttaggagtcccacattgagtatatcaaagtgcttgatgtgatacttaaggcatgaggttctcccacctattgcactagtcttttgggttggg 10567432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 472
Target Start/End: Original strand, 36975237 - 36975330
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||||| |||||||||||| ||| |||||||||| ||||||||  ||| | | ||||||| |||||| |||||||||||||||||||    
T  36975237 tgttaggagtcccacatcgagtagattaaagtgtttgatgtagtatttaagtcataaggctctcccatctattgaactagtcttttgggttggg 36975330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 469
Target Start/End: Complemental strand, 22587086 - 22586996
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggtt 469  Q
    ||||| ||||||| |||||||||  | ||| |||||||||| ||| |||| |||||| | |||| ||||||||||||||||||||||||||    
T  22587086 tgttacgagtcccacatcgagtaactaaaagtgtttgatgtagtacttaagccatgaggctctcacacctattggactagtcttttgggtt 22586996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 472
Target Start/End: Complemental strand, 15173576 - 15173483
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||| ||||||| || || |||| | ||| || ||||||||||| |||| |||||| | |||||||||| |||||||||||||||||||||||    
T  15173576 tgttaagagtcccacaccgggtagctaaaagtgcttgatgtggtacttaacccatgaggctctcccaccttttggactagtcttttgggttggg 15173483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 296
Target Start/End: Original strand, 23284255 - 23284541
Alignment:
Q  10 caatcactaaaacactcattttttaattgggcattaccaaccaatcttttataaaccttacaacaaaaacagcatactctctataaaactttttcgcata 109  Q
    ||||||||||||| |||||||  ||||||  |  |||||| |  ||||||| |||| |||||| |||||||  ||| |||  || || || ||| | |||    
T  23284255 caatcactaaaaccctcatttgctaattgacctctaccaatccctcttttaaaaactttacaaaaaaaacaaaataatct--atcaagctcttttgaata 23284352  T
Q  110 aacaagtcaatagctatcgtacttttctccatttggtaaatctctagtgttcaaattagccgtaaaccgtttagaaaattcatctctagaaccctttaca 209  Q
    |||||| ||||  |||||  |||| |||||||||| ||||  | |||| | ||||||||  ||||| ||| ||||| ||| |||||||| |||||| ||     
T  23284353 aacaagccaatctctatcacacttctctccatttgataaagttatagtatacaaattagttgtaaagcgtctagaagatttatctctaggacccttcacg 23284452  T
Q  210 atggacaaatctcttt--ggaccttttgtgactaataagtcaatcattttagaatcaagagtatcctaattttttggatcaaatatatc 296  Q
    ||    |||||||||   || ||||||||  |||| || |||||||||||||| || |||| |||| ||||| ||||||||||||||||    
T  23284453 atacttaaatctcttatagggccttttgtagctaacaactcaatcattttagactcgagagaatcccaatttcttggatcaaatatatc 23284541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 428
Target Start/End: Original strand, 36976219 - 36976268
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaa 428  Q
    ||||||||||| | |||||||||||||||| ||||||||||| |||||||    
T  36976219 tgttaggagtctcacatcgagtagatcaaagtgtttgatgtgatatttaa 36976268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 470
Target Start/End: Complemental strand, 10321693 - 10321602
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttg 470  Q
    ||||||||||||| ||||   || || ||| |||||||||||||| |||| |||||| | ||||  ||||||||||||| ||||||| ||||    
T  10321693 tgttaggagtcccacatcagataaataaaagtgtttgatgtggtacttaagccatgaggctctcttacctattggactaatcttttgagttg 10321602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 470
Target Start/End: Complemental strand, 22599182 - 22599091
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttg 470  Q
    ||||||||||||| ||||| |||  | ||| |||||||| ||||| ||||  ||||| | |||| || |||||||||||||||||| |||||    
T  22599182 tgttaggagtcccacatcgggtaactaaaagtgtttgatatggtacttaagtcatgaggctctctcatctattggactagtcttttaggttg 22599091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 466
Target Start/End: Complemental strand, 39570013 - 39569950
Alignment:
Q  403 atcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgg 466  Q
    |||||| || ||||||| ||| ||||||| ||| ||||| ||||||||||||||||||| ||||    
T  39570013 atcaaagtgcttgatgtagtacttaaaccttgaggttcttccacctattggactagtctcttgg 39569950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 471
Target Start/End: Original strand, 16253754 - 16253846
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttgg 471  Q
    ||||||||||| | |||||||||||| |||||| | | ||||||| |||   || ||  |||||||| ||| ||||||| |||||||||||||    
T  16253754 tgttaggagtctcacatcgagtagataaaaatgctcggtgtggtacttaggtcacgagattctcccaactaatggactaatcttttgggttgg 16253846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 466
Target Start/End: Complemental strand, 32064515 - 32064427
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctc-ccacctattggactagtcttttgg 466  Q
    ||||||||||| | |||| | || || ||| |||||||||||||||||||||| ||| | |||| ||||||| ||||||| | ||||||    
T  32064515 tgttaggagtcacgcatcaaataaataaaagtgtttgatgtggtatttaaaccgtgatgctctctccacctaatggactaattttttgg 32064427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 1803023 - 1803389
Alignment:
Q  10 caatcactaaaacactcattttttaattgggcattaccaaccaatcttttataaaccttacaacaaaaacagcatactctctataaaactttttcgcata 109  Q
    ||||||||||||| ||||||| |||||||  ||||||||||| ||||||||||||| |||||||||||| |  |||||||  || || || ||| | |||    
T  1803023 caatcactaaaaccctcatttgttaattgaccattaccaacccatcttttataaactttacaacaaaaaaaaaatactct--atcaagctctttggaata 1803120  T
Q  110 aacaagtcaatagctatcgtacttttctccatttggtaaatctctagtgttcaaattagccgtaaaccgtttagaaaattcatctctagaaccctttaca 209  Q
    |||||| ||||  |||||  |||| ||||||||||||||| ||||||| | ||||||||||||||| ||| |||||| || |||||||| ||||||||||    
T  1803121 aacaagccaatctctatcacacttctctccatttggtaaaactctagtatacaaattagccgtaaaacgtctagaaagtttatctctaggaccctttaca 1803220  T
Q  210 atggacaaatctcttt--ggaccttttgtgactaataagtcaatcattttagaatcaagagtatcctaattttttggatcaaatatatcaaagaaattat 307  Q
    | ||||||||||||||  ||||| ||  |  |||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||    
T  1803221 acggacaaatctcttttaggaccattcatagctaataagtcaatcattttagaatcaagagcatcccaatttcttggatcaaatatatcaaggaaattat 1803320  T
Q  308 tcaaattaacatcatcaataatgggcacatcacctctatttttcggatcaacactttcattctccatat 376  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  1803321 tcaaattaacatcatcaacaatgggcacatcatctctattttccggatcaacactttcattctcaatat 1803389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 379 - 471
Target Start/End: Complemental strand, 31412513 - 31412421
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttgg 471  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||| |||| || ||| |||||||||||||||  ||||||||||||||||||    
T  31412513 tgttaggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccgtgaggttctcccacctattcaactagtcttttgggttgg 31412421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 373 - 472
Target Start/End: Complemental strand, 9448750 - 9448651
Alignment:
Q  373 atattttgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    |||| |||||||||||||| ||||||||| |||||| || ||||||||||| |||| || ||| ||||||||||||||||||||||| ||||||||||||    
T  9448750 atatattgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttggg 9448651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 54 - 296
Target Start/End: Original strand, 4976516 - 4976758
Alignment:
Q  54 tcttttataaaccttacaacaaaaacagcatactctctataaaactttttcgcataaacaagtcaatagctatcgtacttttctccatttggtaaatctc 153  Q
    ||||||| |||| ||||||||||||||  ||| |||  || || || ||| | ||||||||| ||||  |||||  |||| |||||||||| ||||  ||    
T  4976516 tcttttaaaaactttacaacaaaaacaaaataatct--atcaagctcttttgaataaacaagccaatctctatcacacttctctccatttgataaagttc 4976613  T
Q  154 tagtgttcaaattagccgtaaaccgtttagaaaattcatctctagaaccctttacaatggacaaatctcttt--ggaccttttgtgactaataagtcaat 251  Q
    |||| | ||||||||||||||| ||| ||||| ||| |||||||| |||||| |||||    |||||| ||   || |||||||| ||||| || |||||    
T  4976614 tagtatacaaattagccgtaaagcgtctagaagatttatctctaggacccttcacaatacttaaatctattacggggccttttgtaactaacaactcaat 4976713  T
Q  252 cattttagaatcaagagtatcctaattttttggatcaaatatatc 296  Q
    ||||||||| ||||||| |||| ||||| ||||||||||||||||    
T  4976714 cattttagactcaagagaatcccaatttcttggatcaaatatatc 4976758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 23183206 - 23182920
Alignment:
Q  10 caatcactaaaacactcattttttaattgggcattaccaaccaatcttttataaaccttacaacaaaaacagcatactctctataaaactttttcgcata 109  Q
    ||||||||||||| |||||||  ||||||  |  |||||| |  ||||||| |||| ||||||||||||||  ||| |||  || || || ||| | |||    
T  23183206 caatcactaaaaccctcatttactaattgacctctaccaatccctcttttaaaaactttacaacaaaaacaaaataatct--atcaagctcttttgaata 23183109  T
Q  110 aacaagtcaatagctatcgtacttttctccatttggtaaatctctagtgttcaaattagccgtaaaccgtttagaaaattcatctctagaaccctttaca 209  Q
    |||||| ||||  |||||  |||| |||||||||| ||||  |||||| | ||||||||||||||| ||| ||||| ||| |||| ||| |||||| |||    
T  23183108 aacaagccaatctctatcacacttctctccatttgataaagttctagtatacaaattagccgtaaagcgtctagaagatttatctttaggacccttcaca 23183009  T
Q  210 atggacaaatctcttt--ggaccttttgtgactaataagtcaatcattttagaatcaagagtatcctaattttttggatcaaatatatc 296  Q
    ||    |||||||||   || ||||||||  |||| || |||||||||||||| ||||||| |||| ||||| ||||||||||||||||    
T  23183008 atacttaaatctcttacagggccttttgtagctaacaactcaatcattttagactcaagagaatcccaatttcttggatcaaatatatc 23182920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 379 - 472
Target Start/End: Original strand, 32024950 - 32025043
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||||| ||||||||| |||||| || ||||||||||| |||| || ||| ||||||||||||||||||||||| ||||||||||||    
T  32024950 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttggg 32025043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 379 - 472
Target Start/End: Original strand, 32025246 - 32025339
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||||| ||||||||| |||||| || ||||||||||| |||| || ||| ||||||||||||||||||||||| ||||||||||||    
T  32025246 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttggg 32025339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 379 - 472
Target Start/End: Original strand, 32025542 - 32025635
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||||| ||||||||| |||||| || ||||||||||| |||| || ||| ||||||||||||||||||||||| ||||||||||||    
T  32025542 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttggg 32025635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 374 - 473
Target Start/End: Original strand, 51865803 - 51865902
Alignment:
Q  374 tattttgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttgggt 473  Q
    |||| ||||||||||||| ||| ||||||| || | |||||||||||||| ||||  ||||||||||||||||||||| |||||||||||  ||||||||    
T  51865803 tattctgttaggagtcccacatagagtagaacatagtgtttgatgtggtacttaagtcatgaagttctcccacctattagactagtctttcaggttgggt 51865902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 468
Target Start/End: Original strand, 4119115 - 4119204
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggt 468  Q
    ||||||||||||| |||||||||||| ||| |||| ||  ||||| |||| |||||| | ||| ||||| | ||||||||||||||||||    
T  4119115 tgttaggagtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggt 4119204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 475
Target Start/End: Complemental strand, 50013748 - 50013652
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttgggttc 475  Q
    ||||||||||||| ||| ||||| || |||| ||||||||||||||||||  ||||| | |||| ||| || |||||  ||||||||| ||| ||||    
T  50013748 tgttaggagtcccacattgagtaaattaaaaggtttgatgtggtatttaagtcatgatgctctctcacttaatggacgggtcttttggattgtgttc 50013652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 7e-44; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 10 - 304
Target Start/End: Complemental strand, 2245103 - 2244809
Alignment:
Q  10 caatcactaaaacactcattttttaattgggcattaccaaccaatcttttataaaccttacaacaaaaacagcatactctctataaaactttttcgcata 109  Q
    ||||||| ||||| ||||||| |||||||  | |||| || || ||||||| |||| ||||||||||||||  ||||| |  || ||||| ||||| |||    
T  2245103 caatcaccaaaaccctcatttgttaattgacctttactaatcactcttttaaaaactttacaacaaaaacaaaatacttt--atcaaactctttcgaata 2245006  T
Q  110 aacaagtcaatagctatcgtacttttctccatttggtaaatctctagtgttcaaattagccgtaaaccgtttagaaaattcatctctagaaccctttaca 209  Q
    |||||| ||||  |||||  |||| |||||||||| |||| ||||||| | |||||||| |||||| ||| |||||| || |||| ||| ||| || |||    
T  2245005 aacaagccaatctctatcacacttctctccatttgataaaactctagtatacaaattagacgtaaagcgtctagaaagtttatctttaggaccattcaca 2244906  T
Q  210 atggacaaatctcttt--ggaccttttgtgactaataagtcaatcattttagaatcaagagtatcctaattttttggatcaaatatatcaaagaaat 304  Q
    | ||||||||||||||  |||||||   | |||||||| |||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||    
T  2244905 acggacaaatctcttttaggaccttccataactaataaatcaatcattttagaatcaagagcatcccaatttcttggatcaaatatatcaaacaaat 2244809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 376 - 469
Target Start/End: Original strand, 19987642 - 19987735
Alignment:
Q  376 ttttgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggtt 469  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| ||||||    
T  19987642 ttttgttaggagtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgaggttctcccacctattggactagtcttctgggtt 19987735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 379 - 472
Target Start/End: Original strand, 19987939 - 19988032
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||| |||||||||||||||||||||||||| |||||||||    
T  19987939 tgttaggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccatgaggttctcccacctattggactagtcttctgggttggg 19988032  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 54 - 296
Target Start/End: Original strand, 10430261 - 10430503
Alignment:
Q  54 tcttttataaaccttacaacaaaaacagcatactctctataaaactttttcgcataaacaagtcaatagctatcgtacttttctccatttggtaaatctc 153  Q
    ||||||| |||| ||||||||||||||  ||| |||  || || || ||| | ||||||||| ||||  |||||  |||| |||||||||| ||||  ||    
T  10430261 tcttttaaaaactttacaacaaaaacaaaataatct--atcaagctcttttgaataaacaagccaatctctatcacacttctctccatttgataaagttc 10430358  T
Q  154 tagtgttcaaattagccgtaaaccgtttagaaaattcatctctagaaccctttacaatggacaaatctct--ttggaccttttgtgactaataagtcaat 251  Q
    |||| | ||||||||||||||| ||| ||||| ||| ||||||||||||||| || ||    ||||||||  | || ||||||||  |||| || |||||    
T  10430359 tagtatacaaattagccgtaaagcgtctagaagatttatctctagaacccttcacgatacttaaatctcttatagggccttttgtagctaacaactcaat 10430458  T
Q  252 cattttagaatcaagagtatcctaattttttggatcaaatatatc 296  Q
    ||||||||| || | || |||| ||||| ||||||||||||||||    
T  10430459 cattttagactcgacagaatcccaatttcttggatcaaatatatc 10430503  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 379 - 471
Target Start/End: Original strand, 38978713 - 38978805
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttgg 471  Q
    ||||||||||||| ||| |||||||| ||| |||||||||||||| ||||||||||| | ||| ||||||| |||| ||||||||| ||||||    
T  38978713 tgttaggagtcccacatggagtagataaaagtgtttgatgtggtacttaaaccatgaggctcttccacctaatggattagtctttttggttgg 38978805  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 107 - 296
Target Start/End: Complemental strand, 54780757 - 54780566
Alignment:
Q  107 ataaacaagtcaatagctatcgtacttttctccatttggtaaatctctagtgttcaaattagccgtaaaccgtttagaaaattcatctctagaacccttt 206  Q
    ||||||||| ||||  |||||  |||| |||||||||| ||||  |||||| | ||||||||||||||| ||| ||||| ||| |||||||| ||||||     
T  54780757 ataaacaagccaatctctatcacacttctctccatttgataaagttctagtatacaaattagccgtaaagcgtctagaagatttatctctaggacccttc 54780658  T
Q  207 acaatggacaaatctct--ttggaccttttgtgactaataagtcaatcattttagaatcaagagtatcctaattttttggatcaaatatatc 296  Q
    || ||    ||||||||  | || ||||||||  |||| || |||||||||||||| || |||| |||| ||||| ||||||||||||||||    
T  54780657 acgatacttaaatctcttatagggccttttgtagctaacaactcaatcattttagactcgagagaatcccaatttcttggatcaaatatatc 54780566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 379 - 472
Target Start/End: Complemental strand, 8107534 - 8107441
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||||| |||||||||||||||| || ||||||||||| |||| | |||| ||||||||| | |||| ||||| |||||| ||||||    
T  8107534 tgttaggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaagctatgaggttctcccatccattgaactagccttttgagttggg 8107441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 397 - 474
Target Start/End: Complemental strand, 7833857 - 7833780
Alignment:
Q  397 gagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttgggtt 474  Q
    |||||||| ||| || ||||||||||| ||||  ||||| | ||||||||||| ||||||||||||||||||||||||    
T  7833857 gagtagataaaagtgcttgatgtggtacttaagtcatgaggctctcccacctaatggactagtcttttgggttgggtt 7833780  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 471
Target Start/End: Original strand, 11028757 - 11028846
Alignment:
Q  381 ttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttgg 471  Q
    ||||||||| | ||||||||| || ||| ||||||||||| |||||||||||||| | |||| |||||| ||||||| | |||||||||||    
T  11028757 ttaggagtctcacatcgagtaaataaaagtgtttgatgtgatatttaaaccatgaggatctctcacctaatggacta-ttttttgggttgg 11028846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 8107254 - 8107169
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtctttt 464  Q
    |||||| |||||| |||| |||| |||||| ||||||||  |||| |||| |||||| ||||||||||| ||||||||| ||||||    
T  8107254 tgttagaagtcccacatcaagtatatcaaagtgtttgatccggtacttaagccatgatgttctcccacccattggactaatctttt 8107169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 2244747 - 2244676
Alignment:
Q  303 attattcaaattaacatcatcaataatgggcacatcacctctatttttcggatcaacactttcattctccatatt 377  Q
    ||||||||||||||||||||||  | |    |||||||||||||||| |  ||||||||||||||||||||||||    
T  2244747 attattcaaattaacatcatcaccatta---acatcacctctattttccaaatcaacactttcattctccatatt 2244676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 469
Target Start/End: Complemental strand, 56101154 - 56101095
Alignment:
Q  410 tgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggtt 469  Q
    |||||||||||||||||||  ||||  | |||  ||||||||||||||||||||||||||    
T  56101154 tgtttgatgtggtatttaagtcatggggctctagcacctattggactagtcttttgggtt 56101095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 428
Target Start/End: Original strand, 41206465 - 41206514
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaa 428  Q
    ||||||| |||||  ||||||||||| ||| |||||||||||||||||||    
T  41206465 tgttaggcgtcccatatcgagtagataaaagtgtttgatgtggtatttaa 41206514  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 469
Target Start/End: Original strand, 17770988 - 17771064
Alignment:
Q  393 catcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggtt 469  Q
    ||||||| |||| ||||||||||||||  || |||| |||||||| ||||||   || || ||||||||||||||||    
T  17770988 catcgagaagataaaaatgtttgatgtaatacttaagccatgaagctctcccttttaatgaactagtcttttgggtt 17771064  T

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Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 381 - 472
Target Start/End: Original strand, 26533280 - 26533371
Alignment:
Q  381 ttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||| |||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  26533280 ttaggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaaaccatgaggttctcccacctaatggactagtcttttgggttggg 26533371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 379 - 472
Target Start/End: Original strand, 26533574 - 26533668
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaa-ccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    |||| |||||||| |||||||||||||||| || ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  26533574 tgtttggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaaaaccatgaggttctcccacctattggactagtcttttgggttggg 26533668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 378 - 472
Target Start/End: Original strand, 38144013 - 38144107
Alignment:
Q  378 ttgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    |||||||||||||| ||||||||| |||||| || ||||||||||| |||| || ||| ||||||||||||||||||||||| ||||||||||||    
T  38144013 ttgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttggg 38144107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 379 - 472
Target Start/End: Original strand, 44279301 - 44279394
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||||| |||| ||||||||||| ||||||||| |||| ||||||| ||| ||||||||||||||| ||||| ||||||||||||||    
T  44279301 tgttaggagtcccacatcaagtagatcaaagtgtttgatgcggtacttaaaccttgaggttctcccacctattagactaatcttttgggttggg 44279394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 393 - 472
Target Start/End: Original strand, 31074228 - 31074307
Alignment:
Q  393 catcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    |||||||||||||||| | |||||||||||| |||| |||||| ||||||  | ||||||||||||||||||||||||||    
T  31074228 catcgagtagatcaaagtatttgatgtggtacttaagccatgaggttctcatatctattggactagtcttttgggttggg 31074307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 472
Target Start/End: Original strand, 44279004 - 44279098
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtc-ttttgggttggg 472  Q
    ||||||||||| | |||| | ||||||| | ||| |||||||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||    
T  44279004 tgttaggagtctcacatcaaatagatcatagtgtatgatgtggtacttaaaccatgaggttctcccacctattggagtagtctttttgggttggg 44279098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 472
Target Start/End: Complemental strand, 8596552 - 8596491
Alignment:
Q  411 gtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||||| |||| || ||| ||||||||||||||||||||||| ||||||||||||    
T  8596552 gtttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttggg 8596491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 472
Target Start/End: Original strand, 21089075 - 21089168
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||||| ||||||||| || | | ||||| |||||||||||||||||| | | ||| | ||||| |||| |||||||||||||||||    
T  21089075 tgttaggagtcccacatcgagtaaataagagtgttttatgtggtatttaaaccatcaggctctgcgacctaatggattagtcttttgggttggg 21089168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 105 - 296
Target Start/End: Complemental strand, 40448861 - 40448668
Alignment:
Q  105 gcataaacaagtcaatagctatcgtacttttctccatttggtaaatctctagtgttcaaattagccgtaaaccgtttagaaaattcatctctagaaccct 204  Q
    ||||||||||| ||||  |||||  |||| |||| ||||  ||||  |||||| | ||||||| ||||||| ||| ||||||||| |||||||| |||||    
T  40448861 gcataaacaagccaatctctatcacacttctctcaatttaataaagttctagtatacaaattaaccgtaaagcgtctagaaaatttatctctaggaccct 40448762  T
Q  205 ttacaatggacaaatctct--ttggaccttttgtgactaataagtcaatcattttagaatcaagagtatcctaattttttggatcaaatatatc 296  Q
    | |||||    ||||||||  | ||  |||||||  |||| || |||||||||||||| || | || |||| ||||| ||||||||||||||||    
T  40448761 tcacaattcttaaatctcttatagggtcttttgtagctaacaactcaatcattttagactcgatagaatcccaatttcttggatcaaatatatc 40448668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 27187313 - 27187228
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtctttt 464  Q
    ||||||||||| | |||||||||||||||| |  |||||||| || ||||  ||||| ||| || ||||||||||| |||||||||    
T  27187313 tgttaggagtctcacatcgagtagatcaaactacttgatgtgatacttaagtcatgaggttttctcacctattggagtagtctttt 27187228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 428
Target Start/End: Complemental strand, 27187537 - 27187488
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaa 428  Q
    ||||||||||||| |||||||||||||||| || ||||||||||| ||||    
T  27187537 tgttaggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaa 27187488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 27836855 - 27836770
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtctttt 464  Q
    ||||||||||| | |||||||||||||||| |  |||||||| || ||||  ||||| ||| || ||||||||||| |||||||||    
T  27836855 tgttaggagtctcacatcgagtagatcaaactacttgatgtgatacttaagtcatgaggttttctcacctattggagtagtctttt 27836770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 27837127 - 27837042
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtctttt 464  Q
    ||||||||||| | |||||||||||||||| |  |||||||| || ||||  ||||| ||| || ||||||||||| |||||||||    
T  27837127 tgttaggagtctcacatcgagtagatcaaactacttgatgtgatacttaagtcatgaggttttctcacctattggagtagtctttt 27837042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 428
Target Start/End: Complemental strand, 27837351 - 27837302
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaa 428  Q
    ||||||||||||| |||||||||||||||| || ||||||||||| ||||    
T  27837351 tgttaggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaa 27837302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 379 - 472
Target Start/End: Original strand, 12600 - 12693
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||||| |||||||||||||||| || |||||||| || |||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  12600 tgttaggagtcccacatcgagtagatcaaagtgcttgatgtgttacttaagccatgaggttcttccacctattggactagtcttttgggttggg 12693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 379 - 472
Target Start/End: Original strand, 262120 - 262213
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||||| ||||||||| |||||| || ||||||||||| |||| || ||| ||||||||||||||||||||||| ||||||||||||    
T  262120 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttggg 262213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 379 - 472
Target Start/End: Original strand, 30045446 - 30045539
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||||| ||||||||| |||||| || ||||||||||| |||| || ||| ||||||||||||||||||||||| ||||||||||||    
T  30045446 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttggg 30045539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 379 - 472
Target Start/End: Original strand, 32729551 - 32729644
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||| | |||||||||||||||| || |||||||| || ||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  32729551 tgttaggagtctcacatcgagtagatcaaactgcttgatgtgatacttaagtcatgaagttctcccacctattggactagtcttttgagttggg 32729644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 386 - 472
Target Start/End: Complemental strand, 1702273 - 1702187
Alignment:
Q  386 agtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    |||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||| | |||||||| | |||||||||||||||    
T  1702273 agtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgaggttctcctatctattggattggtcttttgggttggg 1702187  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 379 - 471
Target Start/End: Complemental strand, 1702001 - 1701909
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttgg 471  Q
    ||||||||||| | ||||||||||||||||||  ||||||||||| |||| ||| || |||||||||| ||||||||||||||||| ||||||    
T  1702001 tgttaggagtctcacatcgagtagatcaaaatacttgatgtggtacttaagccaagaggttctcccacttattggactagtcttttaggttgg 1701909  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 460
Target Start/End: Original strand, 29141559 - 29141603
Alignment:
Q  416 atgtggtatttaaaccatgaagttctcccacctattggactagtc 460  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  29141559 atgtggtacttaaaccatgaggttctcccacctattggactagtc 29141603  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 470
Target Start/End: Original strand, 33447672 - 33447732
Alignment:
Q  410 tgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttg 470  Q
    |||||||||||||| |||||||||||   ||  ||||| |||| |||||||||||||||||    
T  33447672 tgtttgatgtggtacttaaaccatgagactcgtccaccaattgaactagtcttttgggttg 33447732  T

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Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 45473591 - 45473309
Alignment:
Q  10 caatcactaaaacactcattttttaattgggcattaccaaccaatcttttataaaccttacaacaaaaacagcatactctctataaaactttttcgcata 109  Q
    ||||||||||||| |||||||  ||||||  |  |||||| |  ||||||| |||| ||||||||||||||  ||| |||  || || || ||| | |||    
T  45473591 caatcactaaaaccctcatttactaattgacctctaccaatccctcttttaaaaactttacaacaaaaacaaaataatct--atcaagctcttttgaata 45473494  T
Q  110 aacaagtcaatagctatcgtacttttctccatttggtaaatctctagtgttcaaattagccgtaaaccgtttagaaaattcatctctagaaccctttaca 209  Q
    |||||| ||||  |||||  |||| |||||||||| ||||  |||||| | ||||||||||||||| ||| ||||| ||| |||| ||| |||||| |||    
T  45473493 aacaagccaatctctatcacacttctctccatttgataaagttctagtatacaaattagccgtaaagcgtctagaagatttatctttaggacccttcaca 45473394  T
Q  210 atggacaaatctctt--tggaccttttgtgactaataagtcaatcattttagaatcaagagtatcctaattttttggatcaaata 292  Q
    ||    |||| ||||   || ||||||||  |||| || |||||||||||||| ||||||| |||| ||||| ||||||||||||    
T  45473393 atacttaaatatcttacagggccttttgtagctaacaactcaatcattttagactcaagagaatcccaatttcttggatcaaata 45473309  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 21397237 - 21397322
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtctttt 464  Q
    ||||||||||||| | |||||||||| ||| || |||||||||||||||||||| |  | ||||||||||| ||||||||||||||    
T  21397237 tgttaggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaatggactagtctttt 21397322  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 21791730 - 21791815
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtctttt 464  Q
    ||||||||||||| | |||||||||| ||| || |||||||||||||||||||| |  | ||||||||||| ||||||||||||||    
T  21791730 tgttaggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaatggactagtctttt 21791815  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 379 - 466
Target Start/End: Original strand, 34074291 - 34074378
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgg 466  Q
    |||||||| || | ||||||||||||||||||  |||||||| || ||||  ||||| | ||||||||||||||||||||||||||||    
T  34074291 tgttaggattctcacatcgagtagatcaaaatacttgatgtgatacttaaggcatgaggctctcccacctattggactagtcttttgg 34074378  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 472
Target Start/End: Complemental strand, 15937930 - 15937837
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    |||||| |||||| ||||| ||| || ||| || ||||||||||| |||| ||||||   ||||||||||| ||||||||||||||||||||||    
T  15937930 tgttagaagtcccacatcgggtatataaaattgcttgatgtggtacttaagccatgagtctctcccacctaatggactagtcttttgggttggg 15937837  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 472
Target Start/End: Complemental strand, 34373717 - 34373624
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    |||||||| || | |||||||||||| ||| || ||||||| ||| ||||  | ||| |||||||||||||||||||||||||||||| |||||    
T  34373717 tgttaggactctcacatcgagtagattaaagtgcttgatgtagtacttaagtcgtgaggttctcccacctattggactagtcttttggattggg 34373624  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 394 - 472
Target Start/End: Complemental strand, 34373998 - 34373920
Alignment:
Q  394 atcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||| ||| || ||||||||||| |||| || ||| ||||||| || |||||||||||||||||| ||||||    
T  34373998 atcgagtagattaaagtgcttgatgtggtacttaagccgtgaggttctcctacatattggactagtcttttgcgttggg 34373920  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 9410526 - 9410598
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctatt 451  Q
    |||||||| || | |||||||||||||||| ||||||||||  || ||||||||||| ||||||||| |||||    
T  9410526 tgttaggaatctcacatcgagtagatcaaagtgtttgatgtaatacttaaaccatgaggttctcccatctatt 9410598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 462
Target Start/End: Complemental strand, 22576729 - 22576649
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtctt 462  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||| |||| ||||| |  |||||||||||  |||||||||||    
T  22576729 tgttaggagtcccacatcgagtagataaaaatgcttgatgtggtagttaagccatgga-ctctcccaccta--ggactagtctt 22576649  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 470
Target Start/End: Original strand, 21403280 - 21403368
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttg 470  Q
    ||||||||||||  |||||| ||||| ||| ||||||||||   ||||| || |||||  |||||||||||||||||||  |||||||||||    
T  21403280 tgttaggagtcctacatcgaatagataaaagtgtttgatgt---atttatacaatgaaactctcccacctattggactaaccttttgggttg 21403368  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 470
Target Start/End: Original strand, 21797773 - 21797861
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttg 470  Q
    ||||||||||||  |||||| ||||| ||| ||||||||||   ||||| || |||||  |||||||||||||||||||  |||||||||||    
T  21797773 tgttaggagtcctacatcgaatagataaaagtgtttgatgt---atttatacaatgaaactctcccacctattggactaaccttttgggttg 21797861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 472
Target Start/End: Complemental strand, 21008541 - 21008447
Alignment:
Q  378 ttgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    |||||| ||||||| ||||||||| || ||| |||||| ||||||| ||||   | || | || |||||||| |||||| |||||||||||||||    
T  21008541 ttgttaagagtcccacatcgagtacataaaagtgtttgttgtggtacttaagttacgaggctcccccacctaatggacttgtcttttgggttggg 21008447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 24731176 - 24731136
Alignment:
Q  393 catcgagtagatcaaaatgtttgatgtggtatttaaaccat 433  Q
    |||||||||||| ||| ||||||||||| ||||||||||||    
T  24731176 catcgagtagataaaagtgtttgatgtgatatttaaaccat 24731136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 89 - 296
Target Start/End: Original strand, 54577251 - 54577460
Alignment:
Q  89 tctataaaactttttcgcataaacaagtcaatagctatcgtacttttctccatttggtaaatctctagtgttcaaattagccgtaaaccgtttagaaaat 188  Q
    ||||| ||||| ||| | ||||||||||||||  |||||  |||| |||||||||| ||||  |||||| | |||||||||| |||| ||| ||||||||    
T  54577251 tctatcaaactcttttgaataaacaagtcaatctctatcacacttctctccatttgataaagttctagtatacaaattagccataaagcgtctagaaaat 54577350  T
Q  189 tcatctctagaaccctttacaatggacaaatctcttt--ggaccttttgtgactaataagtcaatcattttagaatcaagagtatcctaattttttggat 286  Q
    | |||||||| |||| | |||||    ||||||||||  || ||||||||  |||  || |||||||||||||| || |||| |||| ||||| | ||||    
T  54577351 ttatctctaggacccgtcacaatttttaaatctcttttagggccttttgtagctaccaactcaatcattttagactcgagagaatcccaatttctaggat 54577450  T
Q  287 caaatatatc 296  Q
    ||||||||||    
T  54577451 caaatatatc 54577460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 472
Target Start/End: Complemental strand, 3870889 - 3870796
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||| | ||||||||||||  ||||| ||||||||||| |||| | | || | |||||||||  |||||||||||||||||||||||    
T  3870889 tgttaggagtctcacatcgagtagatttaaatgcttgatgtggtacttaagctacgaggctctcccaccatttggactagtcttttgggttggg 3870796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 463
Target Start/End: Complemental strand, 19997184 - 19997100
Alignment:
Q  379 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttt 463  Q
    |||||||| || | ||||||||| ||||||||| ||||||||||| ||||  | | |  |||||||||||||| |||||||||||    
T  19997184 tgttaggaatctcacatcgagtatatcaaaatgcttgatgtggtacttaagtcctaagattctcccacctattagactagtcttt 19997100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 428
Target Start/End: Original strand, 7400837 - 7400884
Alignment:
Q  381 ttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaa 428  Q
    ||||||||||| ||||||||| |||||| |||||||||||||| ||||    
T  7400837 ttaggagtcccacatcgagtatatcaaagtgtttgatgtggtacttaa 7400884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 472
Target Start/End: Original strand, 7407882 - 7407917
Alignment:
Q  437 gttctcccacctattggactagtcttttgggttggg 472  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7407882 gttctcccacctattggactagttttttgggttggg 7407917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 2706627 - 2706539
Alignment:
Q  378 ttgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtatttaaaccatgaagttctcccacctattggactagtcttttgg 466  Q
    |||||| |||| || | |||||||||| ||| ||||||||||| ||||||||||| || | ||| | | ||| ||||||||| ||||||    
T  2706627 ttgttaagagttccacgtcgagtagataaaagtgtttgatgtgatatttaaaccacgaggctcttctagctaatggactagtattttgg 2706539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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