View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17978_low_1 (Length: 869)

Name: NF17978_low_1
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17978_low_1
NF17978_low_1
[»] chr6 (11 HSPs)
chr6 (16-853)||(7301467-7302321)
chr6 (743-848)||(7320226-7320331)
chr6 (760-853)||(7304241-7304334)
chr6 (37-293)||(22605165-22605415)
chr6 (214-301)||(7301381-7301468)
chr6 (650-724)||(7320115-7320189)
chr6 (196-294)||(6250081-6250184)
chr6 (215-294)||(21297215-21297294)
chr6 (172-293)||(21130097-21130217)
chr6 (24-139)||(11637896-11638011)
chr6 (133-198)||(9362856-9362920)
[»] chr3 (24 HSPs)
chr3 (24-301)||(32201029-32201306)
chr3 (24-278)||(23161917-23162168)
chr3 (176-301)||(53595950-53596074)
chr3 (176-301)||(53596265-53596389)
chr3 (11-138)||(40195983-40196109)
chr3 (93-300)||(48127777-48127982)
chr3 (212-291)||(43481588-43481667)
chr3 (196-294)||(43978638-43978736)
chr3 (196-294)||(42059858-42059956)
chr3 (232-301)||(29795939-29796008)
chr3 (34-105)||(32200940-32201012)
chr3 (217-296)||(23161835-23161913)
chr3 (10-113)||(16143331-16143435)
chr3 (41-138)||(17732097-17732190)
chr3 (41-138)||(19033328-19033421)
chr3 (216-294)||(23162432-23162510)
chr3 (214-296)||(40195901-40195983)
chr3 (232-301)||(16143428-16143497)
chr3 (196-296)||(43978932-43979032)
chr3 (217-295)||(23162181-23162259)
chr3 (196-270)||(46602551-46602625)
chr3 (250-301)||(17732021-17732073)
chr3 (250-301)||(19033252-19033304)
chr3 (11-79)||(54017711-54017779)
[»] chr8 (10 HSPs)
chr8 (24-291)||(2954400-2954666)
chr8 (37-293)||(5981631-5981893)
chr8 (134-298)||(5981444-5981607)
chr8 (215-291)||(2954307-2954383)
chr8 (56-136)||(3671058-3671137)
chr8 (166-293)||(12156692-12156818)
chr8 (196-285)||(4840524-4840613)
chr8 (216-293)||(11576042-11576118)
chr8 (245-300)||(38833094-38833149)
chr8 (202-248)||(7120544-7120590)
[»] chr4 (23 HSPs)
chr4 (11-294)||(47680618-47680908)
chr4 (37-295)||(11307475-11307741)
chr4 (35-139)||(11197095-11197198)
chr4 (37-295)||(11307186-11307452)
chr4 (37-132)||(47681032-47681126)
chr4 (217-301)||(10396406-10396490)
chr4 (20-128)||(12718000-12718107)
chr4 (227-301)||(10396121-10396195)
chr4 (134-290)||(11197227-11197381)
chr4 (24-113)||(26473485-26473575)
chr4 (178-291)||(51681538-51681650)
chr4 (231-300)||(53468095-53468164)
chr4 (245-293)||(1868049-1868097)
chr4 (123-291)||(8445855-8446022)
chr4 (233-301)||(11196922-11196990)
chr4 (203-291)||(48635115-48635203)
chr4 (176-301)||(922410-922532)
chr4 (24-296)||(51681246-51681521)
chr4 (176-301)||(34946155-34946279)
chr4 (196-301)||(34946468-34946572)
chr4 (65-113)||(8445755-8445803)
chr4 (25-113)||(34946287-34946374)
chr4 (242-299)||(2917523-2917580)
[»] chr1 (19 HSPs)
chr1 (10-127)||(31973496-31973613)
chr1 (42-131)||(34666002-34666091)
chr1 (212-296)||(15327851-15327935)
chr1 (11-139)||(43834364-43834491)
chr1 (139-291)||(43834495-43834646)
chr1 (176-301)||(12466273-12466397)
chr1 (118-301)||(31973322-31973503)
chr1 (118-289)||(26231641-26231809)
chr1 (230-301)||(34665906-34665977)
chr1 (34-132)||(47159167-47159265)
chr1 (37-139)||(5821882-5821982)
chr1 (160-294)||(27686552-27686685)
chr1 (212-296)||(4392271-4392355)
chr1 (343-388)||(25732863-25732908)
chr1 (39-110)||(4392093-4392163)
chr1 (253-300)||(31973746-31973793)
chr1 (209-291)||(4753262-4753344)
chr1 (214-288)||(8179750-8179824)
chr1 (223-293)||(25294877-25294947)
[»] chr2 (14 HSPs)
chr2 (24-286)||(40053167-40053435)
chr2 (214-301)||(40053444-40053531)
chr2 (226-301)||(13792587-13792662)
chr2 (196-291)||(19548144-19548239)
chr2 (161-294)||(11727675-11727807)
chr2 (65-172)||(13792229-13792337)
chr2 (176-301)||(28226327-28226451)
chr2 (196-300)||(30219944-30220048)
chr2 (65-139)||(28226526-28226599)
chr2 (226-294)||(39334465-39334533)
chr2 (226-301)||(35448708-35448783)
chr2 (225-291)||(19547869-19547935)
chr2 (176-301)||(28226645-28226768)
chr2 (193-278)||(40801134-40801219)
[»] chr7 (20 HSPs)
chr7 (34-139)||(21416326-21416430)
chr7 (196-294)||(2463442-2463540)
chr7 (196-291)||(7631268-7631364)
chr7 (39-138)||(23568901-23569000)
chr7 (34-139)||(27597852-27597958)
chr7 (37-294)||(2463154-2463417)
chr7 (24-113)||(8802387-8802475)
chr7 (196-300)||(11776410-11776514)
chr7 (209-287)||(23578080-23578158)
chr7 (232-301)||(36675183-36675252)
chr7 (196-299)||(27597977-27598080)
chr7 (166-293)||(48071384-48071510)
chr7 (155-301)||(27938750-27938894)
chr7 (37-139)||(11776252-11776346)
chr7 (176-293)||(21416185-21416301)
chr7 (51-130)||(7631147-7631227)
chr7 (227-299)||(28445226-28445297)
chr7 (416-463)||(37204874-37204921)
chr7 (196-291)||(45100184-45100279)
chr7 (196-262)||(19495473-19495539)
[»] scaffold0548 (1 HSPs)
scaffold0548 (37-295)||(3964-4231)
[»] chr5 (18 HSPs)
chr5 (176-301)||(13112527-13112651)
chr5 (176-301)||(13042529-13042653)
chr5 (133-293)||(5963681-5963839)
chr5 (234-301)||(26420849-26420916)
chr5 (227-300)||(13042703-13042776)
chr5 (176-301)||(13042986-13043110)
chr5 (227-300)||(13112701-13112774)
chr5 (176-301)||(13112982-13113106)
chr5 (11-113)||(41341350-41341451)
chr5 (246-295)||(3455872-3455921)
chr5 (149-198)||(30886439-30886488)
chr5 (246-301)||(27300753-27300808)
chr5 (250-293)||(41340277-41340320)
chr5 (212-298)||(5038439-5038525)
chr5 (253-299)||(27894144-27894190)
chr5 (419-464)||(1683752-1683797)
chr5 (67-139)||(13112861-13112933)
chr5 (245-301)||(34103543-34103600)
[»] scaffold0256 (1 HSPs)
scaffold0256 (209-300)||(13360-13451)


Alignment Details
Target: chr6 (Bit Score: 570; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 16 - 853
Target Start/End: Original strand, 7301467 - 7302321
Alignment:
Q  16 aatatcctcctcaactgagactcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatacta 115  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7301467 aatatcctcctcaactgtgactcacccacatcactagcctgatccacattaggatcccgctcccactcccccatcgagcctaaccatggctctgatacta 7301566  T
Q  116 gtttgttggggagtctggggagcgacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggt 215  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7301567 gtttgttggggagtttggggagcgacaatgggctaaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggt 7301666  T
Q  216 atatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaacaagaacgaaaaggaaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7301667 atatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaacaagaacgaaaaggaaa 7301766  T
Q  316 atatgattgtagttcaag--nnnnnnnnnctcatggactcataaactcatcatacacttgtgagtctatacgagtctgtaagattatacccgagttgaca 413  Q
    ||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||          ||||||||| ||||    
T  7301767 atatgattgtagttcaagaaaaaaaaaaactcatggactcataaactcatcatacacttgtgagtctatacgagtc----------tacccgagtcgaca 7301856  T
Q  414 acaaacgattctatatgtgatttcactcatttttgccttctagactcgtaatctctcgtctacaa--------gaaagatcactagcccatta-aaaggg 504  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| ||||||    
T  7301857 acaaacgattctatatgtgatttaactcatttttgccttctagactcgtaatctctcgtctacaagtctactcgaaagatcactagcccattacaaaggg 7301956  T
Q  505 agtatataattg------nnnnnnnnnnnngttgataaagtggtaaacaccacttaaaattcacacatgcaactataatgtctcatgttagaacccaaac 598  Q
    ||||||||||||                  |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  7301957 agtatataattgtttttttttttttgttttgttgataaagtggtaaacaccacttaaaattcacacacacaactataatgtctcatgttagaacccaaac 7302056  T
Q  599 gaaaatatcaatattaccaattgagctacaccatacaagcatataaatttcaagagaaaggaatttctcaattgcacaactcactcttttcctcccttgt 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7302057 gaaaatatcaatattaccaattgagctacaccatacaagcatataaatttcaagagaaaggaatttctcaattgcacaactcactcttttcctccctcgt 7302156  T
Q  699 gc----------tctctctctatccattatcaccatnnnnnnnnnnnnnnnnngttccaacaatgcaaattatggaagatccaacaactgactatcatag 788  Q
    ||          ||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||    
T  7302157 gctctctctctatctctctctatccattatcaccatttcttcttcttcttcttgttccaacaatgcaaattatggaagatccaacaactgactatcatag 7302256  T
Q  789 attcttcgtagaagacacaaacatgtacaaccacgttgtattaggaaccttgttaccacaatact 853  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7302257 attcttcgtagaagacacaaacatgtacaaccacgttgtattaggaaccttgttaccacaatact 7302321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 743 - 848
Target Start/End: Original strand, 7320226 - 7320331
Alignment:
Q  743 ttccaacaatgcaaattatggaagatccaacaactgactatcatagattcttcgtagaagacacaaacatgtacaaccacgttgtattaggaaccttgtt 842  Q
    ||||||||||||| || ||||||||| ||||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||    
T  7320226 ttccaacaatgcagatgatggaagatacaacaaccgattatcgtagattcttcatagaagacacagacatgtacaaccacattgtattaggaaccttgtt 7320325  T
Q  843 accaca 848  Q
     |||||    
T  7320326 gccaca 7320331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 760 - 853
Target Start/End: Original strand, 7304241 - 7304334
Alignment:
Q  760 atggaagatccaacaactgactatcatagattcttcgtagaagacacaaacatgtacaaccacgttgtattaggaaccttgttaccacaatact 853  Q
    ||||||||||  | ||| || |||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  7304241 atggaagatctgaaaaccgattatcgtagattcttcatagaagacacaaacatgtacaaccacattgtattaggaaccttgttaccacactact 7304334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 37 - 293
Target Start/End: Original strand, 22605165 - 22605415
Alignment:
Q  37 tcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtctgggga 136  Q
    |||||||||||||||||||||| || | ||||||||||||||| || |||||  ||||||||||| |||| |||||| |  ||||||||||| |  ||||    
T  22605165 tcacccacatcactagcctgat-cacactaggatcccgctcccgct-ccccactgagcctaaccacggctttgatacca--ttgttggggagccccggga 22605260  T
Q  137 gcgacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttata 236  Q
    ||| |||||||  |||| || | ||||| ||||||||||| |||||| | |||||||| |||||||||||  | | ||| |||| ||  || || |||||    
T  22605261 gcggcaatgggccaaacgtccaagacca-taagagacttaaacaccacattcttaccc-aaaaccttaaggcaatgggtttatgggtttccactcttata 22605358  T
Q  237 tatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatt 293  Q
    ||||     ||| |||||||  |||||||||||| ||||||| ||||||||||||||    
T  22605359 tatcctttgtttcctccattcctagtcgatgtggaacataatcactcacacttgatt 22605415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 7301381 - 7301468
Alignment:
Q  214 gtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaacaa 301  Q
    ||||||||||||||| | ||||||||| ||| ||| |||||||| |||||||||||||||||||| |||||||||| |||| ||||||    
T  7301381 gtatatgtgtcccctttcttatatatccaacgtttcctccatttctagtcgatgtgggacataatcactcacacttaattttcaacaa 7301468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 650 - 724
Target Start/End: Original strand, 7320115 - 7320189
Alignment:
Q  650 aagagaaaggaatttctcaattgcacaactcactcttttcctcccttgtgctctctctctatccattatcaccat 724  Q
    |||| ||| ||||||||||||||||||||||| || ||||||||||||| || |||||||||||| |||||||||    
T  7320115 aagaaaaatgaatttctcaattgcacaactcattcatttcctcccttgtcctttctctctatccactatcaccat 7320189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 294
Target Start/End: Complemental strand, 6250184 - 6250081
Alignment:
Q  196 aaaaccttaagatattaggtatatgtgtcccctc-----ttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttg 290  Q
    ||||| |||||  ||||||||||||||| |||||     | ||||||||| ||||||| |||||| |||| ||||||||||||||||| |||||||||||    
T  6250184 aaaactttaagccattaggtatatgtgttccctctgttatattatatatccaacatttcctccatgtttaatcgatgtgggacataatcactcacacttg 6250085  T
Q  291 attt 294  Q
    ||||    
T  6250084 attt 6250081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 215 - 294
Target Start/End: Original strand, 21297215 - 21297294
Alignment:
Q  215 tatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgattt 294  Q
    |||||| |||| |||| || || ||| |||||||| ||||||  |||||||||||||||| ||| |||||||||||||||    
T  21297215 tatatgggtccgctctcttgtacatccaacattttttccattcctagtcgatgtgggacacaatcactcacacttgattt 21297294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 293
Target Start/End: Original strand, 21130097 - 21130217
Alignment:
Q  172 acttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtggg 271  Q
    ||||| |||||| ||||||| |||||| |||||||  | | | | |||| || |||||| ||||||||||    ||| |||||||  |||||||||||||    
T  21130097 acttaaacaccacactcttatccaaaa-ccttaaggcaatggatttatgggttccctctcttatatatcttttgtttcctccattcctagtcgatgtggg 21130195  T
Q  272 acataattactcacacttgatt 293  Q
    ||||||| ||||||||||||||    
T  21130196 acataatcactcacacttgatt 21130217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 11637896 - 11638011
Alignment:
Q  24 cctcaactgagactcacccacatcactagcctgatccatattaggatcccgctcccactccccc-atcgagcctaaccagggctctgatactagtttgtt 122  Q
    |||||| || |||||| |||||| |||||  ||||||| || |||||||| ||| ||||||||| | | ||||||| |||| |||||||||  |||| ||    
T  11637896 cctcaagtgtgactcaaccacatgactagaatgatccacataaggatcccactctcactccccccaacaagcctaatcagg-ctctgatacctgtttctt 11637994  T
Q  123 ggggagtctggggagcg 139  Q
    ||||||||| |||||||    
T  11637995 ggggagtcttgggagcg 11638011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 9362856 - 9362920
Alignment:
Q  133 gggagcgacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaa 198  Q
    ||||||| |||||||| |||| || ||||||| ||||||||||| |||||| ||| ||||||||||    
T  9362856 gggagcggcaatgggacaaacgtccaggacca-taagagacttaaacaccatactattacccaaaa 9362920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 3e-41; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 24 - 301
Target Start/End: Complemental strand, 32201306 - 32201029
Alignment:
Q  24 cctcaactgagactcacccacatcactagcctgatccatattaggatcccgctcccactccccca-tcgagcctaaccagggctctgatactagtttgtt 122  Q
    |||||| || |||||||||||||||||||   || | | | |||||||||||||||||| ||||| | ||||| ||||||||||||||||| ||||||||    
T  32201306 cctcaagtgtgactcacccacatcactagttggacctacactaggatcccgctcccacttccccaatggagcccaaccagggctctgataccagtttgtt 32201207  T
Q  123 ggggagtctggggagcgacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtg 222  Q
    ||||||| |  |||||  ||||||| ||||| |  ||||||||||||| |||||||||||| | |||   || |||| ||||||  || | |||||| ||    
T  32201206 ggggagtttttggagcagcaatgggctaaacgttcaggaccactaagaaacttagacaccaca-tctccacccaaaatcttaaggcatcaagtatatatg 32201108  T
Q  223 tcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaacaa 301  Q
    || ||||| || |||||| ||||||| || ||||||||||||||||| |||||||| ||||||| |||||| |||||||    
T  32201107 tctcctctcttgtatatcaaacatttccttcatttttagtcgatgtgagacataatcactcacatttgattcccaacaa 32201029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 24 - 278
Target Start/End: Complemental strand, 23162168 - 23161917
Alignment:
Q  24 cctcaactgagactcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttg 123  Q
    |||||| || || |||||||||| |||||||||||||| | ||| ||| ||||||| |||||  | ||||||||||||||||||| |||| || || |||    
T  23162168 cctcaagtgtgagtcacccacattactagcctgatccacactagaatctcgctcccgctccca-accgagcctaaccagggctctaataccagattattg 23162070  T
Q  124 gggagtctggggagcgacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgt 223  Q
    ||||||| ||||||||||||||||  |||| || ||||||| ||||| | ||| |||||| | |||   || |||| ||||||  ||  |||||||| ||    
T  23162069 gggagtccggggagcgacaatgggccaaacgtccaggacca-taagaaaattaaacaccaca-tctccacccaaaatcttaaggcatcgggtatatgagt 23161972  T
Q  224 cccctcttttatatatctaacattttctccatttttagtcgatgtgggacataat 278  Q
    | ||||| ||||||||||||  ||| ||||||| ||||||||||  |||||||||    
T  23161971 cacctctcttatatatctaatgtttcctccattcttagtcgatgcaggacataat 23161917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 53596074 - 53595950
Alignment:
Q  176 agacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacat 275  Q
    |||||||| |||||||||||||| ||||||| ||   ||| |||| ||| ||||| ||||||||| ||||||||||| |||| ||||| |||||||||||    
T  53596074 agacaccacactcttacccaaaa-ccttaaggtaacgggtttatgggtctcctctcttatatatccaacattttctctatttctagtcaatgtgggacat 53595976  T
Q  276 aattactcacacttgatttccaacaa 301  Q
    ||| |||| |||||||||||||||||    
T  53595975 aatcactcgcacttgatttccaacaa 53595950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 53596389 - 53596265
Alignment:
Q  176 agacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacat 275  Q
    |||||||| |||||||||||||| ||||||| ||   ||| |||| ||| ||||| ||||||||| ||||||||||| |||| ||||| |||||||||||    
T  53596389 agacaccacactcttacccaaaa-ccttaaggtaacgggtttatgggtctcctctcttatatatccaacattttctctatttctagtcaatgtgggacat 53596291  T
Q  276 aattactcacacttgatttccaacaa 301  Q
    ||| |||| |||||||||||||||||    
T  53596290 aatcactcgcacttgatttccaacaa 53596265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 40195983 - 40196109
Alignment:
Q  11 ccaagaatatcctcctcaactgagactcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctga 110  Q
    |||| ||| ||| |||||| || || ||||||||||||||||||||||||| | ||||||||||||||| || ||||| | ||||||||||| |||||||    
T  40195983 ccaacaatctccccctcaagtgtgagtcacccacatcactagcctgatccacactaggatcccgctcccgctaccccaccaagcctaaccagagctctga 40196082  T
Q  111 tactagtttgttggggagtctggggagc 138  Q
    ||| || ||||||||||| | |||||||    
T  40196083 taccag-ttgttggggagaccggggagc 40196109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 93 - 300
Target Start/End: Original strand, 48127777 - 48127982
Alignment:
Q  93 gcctaaccagggctctgatactagtttgttggggagtctggggagcgacaatgggataaacctctaggacca-ctaagagacttagacaccaaactctta 191  Q
    |||||||||| |||||||||||||||||||||||||    | ||||| ||||||  ||||| |||||||||| ||||||||   |||||||| |||||||    
T  48127777 gcctaaccagtgctctgatactagtttgttggggagcgatgagagcggcaatggactaaacgtctaggaccatctaagagaa--agacaccacactctta 48127874  T
Q  192 cccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttga 291  Q
     |||||| | ||||   | | ||| |||| ||| ||||| ||||||||| ||| ||| | |||||| |||| |||||| |||||||| ||||||| ||||    
T  48127875 tccaaaa-cattaaagcaatgggtttatgggtctcctctcttatatatcaaacgtttccaccatttatagttgatgtgtgacataatcactcacatttga 48127973  T
Q  292 tttccaaca 300  Q
    |||||||||    
T  48127974 tttccaaca 48127982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 43481667 - 43481588
Alignment:
Q  212 aggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttga 291  Q
    ||||||||| ||||||||| ||||||||| ||||||| |||||||  ||||||||||| |||||||| ||||||||||||    
T  43481667 aggtatatgggtcccctctcttatatatccaacatttcctccattcctagtcgatgtgagacataatcactcacacttga 43481588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 196 - 294
Target Start/End: Original strand, 43978638 - 43978736
Alignment:
Q  196 aaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgattt 294  Q
    |||||||||||  | |||||||||| ||| ||||| ||||||||| ||  ||| |||||||  |||||||||||||||||||| |||||||||||||||    
T  43978638 aaaaccttaaggcaataggtatatgagtctcctctcttatatatccaatgtttcctccattcctagtcgatgtgggacataatcactcacacttgattt 43978736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 196 - 294
Target Start/End: Original strand, 42059858 - 42059956
Alignment:
Q  196 aaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgattt 294  Q
    |||||||||||| |||||||||| ||||||||||| ||||||||| |||| || ||| || | || || ||||  |||||||| |||||||||||||||    
T  42059858 aaaaccttaagacattaggtataagtgtcccctctcttatatatcaaacaattcctctatgtctaatcaatgtaagacataatcactcacacttgattt 42059956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 29796008 - 29795939
Alignment:
Q  232 ttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaacaa 301  Q
    ||||||||||||| ||||||  |||||||||||||||| || ||||| ||| ||||||||||||||||||    
T  29796008 ttatatatctaacgttttctttatttttagtcgatgtgagatataatcactaacacttgatttccaacaa 29795939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 32201012 - 32200940
Alignment:
Q  34 gactcacccacatcactagcctgatccatattaggatc-ccgctcccactcccccatcgagcctaaccagggc 105  Q
    |||||||||||||||||||| ||||| | ||||||||| | ||||| |||||||||||||||||||| |||||    
T  32201012 gactcacccacatcactagcatgatctacattaggatctctgctcctactcccccatcgagcctaactagggc 32200940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 23161913 - 23161835
Alignment:
Q  217 tatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttcc 296  Q
    |||| ||| ||||| |||||||||||| |||| ||| ||| ||||||||||| ||||||||| |||||||||||||||||    
T  23161913 tatgagtcacctctcttatatatctaatatttcctctattcttagtcgatgt-ggacataatcactcacacttgatttcc 23161835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 16143435 - 16143331
Alignment:
Q  10 tccaagaatatcctcctcaactgagactcacccacatcactagcctgatccatattaggatcccgctcccactccc--ccatcgagcctaaccagggctc 107  Q
    ||||| ||| ||| |||||| || |||||||||||||||||||  ||||||| | ||| |||||||||||||||||  ||| | |||||||||| |||||    
T  16143435 tccaacaatctccccctcaagtgtgactcacccacatcactaggatgatccacactagaatcccgctcccactcccgtccagcaagcctaacca-ggctc 16143337  T
Q  108 tgatac 113  Q
    ||||||    
T  16143336 tgatac 16143331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 17732097 - 17732190
Alignment:
Q  41 ccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtctggggagc 138  Q
    ||||||||||||||||||||| | ||||||||||||||| || |||||  ||||||||||| ||||||||||| |   ||||||||||| ||||||||    
T  17732097 ccacatcactagcctgatcca-actaggatcccgctcccgct-ccccactgagcctaaccacggctctgatacca--ctgttggggagtttggggagc 17732190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 19033328 - 19033421
Alignment:
Q  41 ccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtctggggagc 138  Q
    ||||||||||||||||||||| | ||||||||||||||| || |||||  ||||||||||| ||||||||||| |   ||||||||||| ||||||||    
T  19033328 ccacatcactagcctgatcca-actaggatcccgctcccgct-ccccactgagcctaaccacggctctgatacca--ctgttggggagtttggggagc 19033421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 23162432 - 23162510
Alignment:
Q  216 atatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgattt 294  Q
    ||||||||||||||| |||||| |||||| |||  ||||||  || ||||| ||||||||||| |||||||||||||||    
T  23162432 atatgtgtcccctctcttatatgtctaacgtttcatccattcataatcgatatgggacataatcactcacacttgattt 23162510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 214 - 296
Target Start/End: Original strand, 40195901 - 40195983
Alignment:
Q  214 gtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttcc 296  Q
    ||||||| ||| ||||| ||||||||| ||| ||| |||||||  |||||||||||  ||||||| |||||||||||||||||    
T  40195901 gtatatgggtctcctctcttatatatccaacgtttcctccattcctagtcgatgtgaaacataatcactcacacttgatttcc 40195983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 16143497 - 16143428
Alignment:
Q  232 ttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaacaa 301  Q
    ||||||||| ||||||| |||||||| |||  ||||||| |||| || ||||||||||||||||||||||    
T  16143497 ttatatatccaacatttgctccatttctagcagatgtggaacattatcactcacacttgatttccaacaa 16143428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 296
Target Start/End: Original strand, 43978932 - 43979032
Alignment:
Q  196 aaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttc 295  Q
    |||||||||||  | |||||||| | | | ||||| ||||| | | ||| ||| ||||||| ||||||||||||||||||||| ||||||| ||||||||    
T  43978932 aaaaccttaaggcaataggtatacggggctcctctcttatacacccaacgtttcctccattcttagtcgatgtgggacataatcactcacatttgatttc 43979031  T
Q  296 c 296  Q
    |    
T  43979032 c 43979032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 217 - 295
Target Start/End: Complemental strand, 23162259 - 23162181
Alignment:
Q  217 tatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttc 295  Q
    |||| ||||||||| |||||| || ||| ||| |||||||  || ||||||||||||||||| |||||||||| |||||    
T  23162259 tatgagtcccctctcttatatgtccaacgtttcctccattcctaatcgatgtgggacataatcactcacactttatttc 23162181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 46602551 - 46602625
Alignment:
Q  196 aaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgg 270  Q
    |||| ||||||||||||||||| |||||||||||| ||||||||| || ||||| | ||||| || |||| ||||    
T  46602551 aaaatcttaagatattaggtatgtgtgtcccctctcttatatatcaaatatttttttcatttctattcgacgtgg 46602625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 17732021 - 17732073
Alignment:
Q  250 ctccatttttagtcgatgtgggacataattactcacacttgatt-tccaacaa 301  Q
    |||||||  |||||||||||||||||||| |||||||||||||| ||||||||    
T  17732021 ctccattcctagtcgatgtgggacataatcactcacacttgattatccaacaa 17732073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 19033252 - 19033304
Alignment:
Q  250 ctccatttttagtcgatgtgggacataattactcacacttgatt-tccaacaa 301  Q
    |||||||  |||||||||||||||||||| |||||||||||||| ||||||||    
T  19033252 ctccattcctagtcgatgtgggacataatcactcacacttgattatccaacaa 19033304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 54017711 - 54017779
Alignment:
Q  11 ccaagaatatcctcctcaactgagactcacccacatcactagcctgatccatattaggatcccgctccc 79  Q
    |||| ||| ||| |||||| || || ||||||||||||||||||||||||| | |||| ||||||||||    
T  54017711 ccaacaatctccccctcaagtgtgaatcacccacatcactagcctgatccacactagggtcccgctccc 54017779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 5e-40; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 24 - 291
Target Start/End: Original strand, 2954400 - 2954666
Alignment:
Q  24 cctcaactgagactcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaacc-agggctctgatactagtttgtt 122  Q
    |||||| || || ||||||||||||||||| ||||||| | |||||||  ||||||||||||||| ||||||||||| |||||||||| || || |||||    
T  2954400 cctcaagtgtgagtcacccacatcactagcttgatccacactaggatcttgctcccactcccccaccgagcctaaccaagggctctgaaaccag-ttgtt 2954498  T
Q  123 ggggagtctggggagcgacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtg 222  Q
    ||| || |  ||||||| |||||||  |||| || ||||||| |||||||||||||| ||| | |||   || |||||||||||  || ||| ||||| |    
T  2954499 gggaagccccgggagcggcaatgggtcaaacgtccaggaccaataagagacttagacgccaca-tctccaccgaaaaccttaaggcatcaggcatatggg 2954597  T
Q  223 tcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttga 291  Q
    ||  |||| ||||||||| |||||||||||||||  ||||| |||||||||||||| ||||||||||||    
T  2954598 tcttctctcttatatatccaacattttctccattcctagtctatgtgggacataatcactcacacttga 2954666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 37 - 293
Target Start/End: Original strand, 5981631 - 5981893
Alignment:
Q  37 tcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtctggg-- 134  Q
    ||||||||||||||||||||||||| | |||||||||||||||||| ||||| ||||||||||||||| |||||||| | ||  | |||||||| |||      
T  5981631 tcacccacatcactagcctgatccacactaggatcccgctcccact-ccccaccgagcctaaccagggttctgataccatttcttgggggagtccgggga 5981729  T
Q  135 -------gagcgacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccc 227  Q
           ||||| ||||||| ||||| || ||||||| |||||||||||||||||| | |||   || |||||||||||  | | ||| |||| ||||||    
T  5981730 gcgtcgagagcggcaatgggctaaacttcaaggaccagtaagagacttagacaccaca-tctccacccaaaaccttaaggcaat-ggtttatgggtcccc 5981827  T
Q  228 tcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatt 293  Q
    ||| ||||||||| ||| ||| |||||||  || | |||||||||||||||  |||||||||||||    
T  5981828 tctcttatatatccaacgtttcctccattcctaattgatgtgggacataatccctcacacttgatt 5981893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 134 - 298
Target Start/End: Original strand, 5981444 - 5981607
Alignment:
Q  134 ggagcgacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctctttt 233  Q
    |||| ||||||||| ||||| || || |||| |||||||||||||||||| | |   |||| |||||||||||  || ||||| ||| ||||||||| ||    
T  5981444 ggagtgacaatgggctaaacgtccagaaccaataagagacttagacaccacatttccaccc-aaaaccttaaggcatcaggtacatgggtcccctctctt 5981542  T
Q  234 atatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaa 298  Q
    ||||||| ||| |||||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  5981543 atatatccaacgttttctccattcctagtcgatgtgggacataatcactcacacttgatttccaa 5981607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 2954307 - 2954383
Alignment:
Q  215 tatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttga 291  Q
    |||||| ||| ||||| ||||||||| |||||||||||||||  |||||||||||||| ||||| ||||||||||||    
T  2954307 tatatgggtctcctctcttatatatccaacattttctccattcctagtcgatgtgggaaataatcactcacacttga 2954383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 3671058 - 3671137
Alignment:
Q  56 gatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtctgggga 136  Q
    |||||| | |||||||||||||||||||||||| | |||||| ||| | ||||||||| | ||||||||||||||||||||    
T  3671058 gatccacactaggatcccgctcccactcccccagcaagcctagcca-gactctgataccaatttgttggggagtctgggga 3671137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 293
Target Start/End: Original strand, 12156692 - 12156818
Alignment:
Q  166 taagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcga 265  Q
    ||||||||||| ||| || |||||||||||||| |||||||| | | ||| |||| || |  ||| ||||||||||    ||| |||||||  || ||||    
T  12156692 taagagacttaaacatcacactcttacccaaaa-ccttaagacaatgggtttatgagttctttctcttatatatcttttgtttcctccattcctaatcga 12156790  T
Q  266 tgtgggacataattactcacacttgatt 293  Q
    ||||||||||||| ||||||||||||||    
T  12156791 tgtgggacataatcactcacacttgatt 12156818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 285
Target Start/End: Complemental strand, 4840613 - 4840524
Alignment:
Q  196 aaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcac 285  Q
    ||||| ||||| ||| ||||||||  ||||||||| ||||||||| ||  ||| |||||||  || ||||||||||||||||||| ||||    
T  4840613 aaaactttaaggtatcaggtatataagtcccctctcttatatatccaatgtttcctccattcatattcgatgtgggacataattaatcac 4840524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 293
Target Start/End: Complemental strand, 11576118 - 11576042
Alignment:
Q  216 atatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatt 293  Q
    ||||||||| ||||| ||||||||| ||| || | || ||| |||||||| |||||||||||| ||||||||||||||    
T  11576118 atatgtgtctcctctcttatatatccaactttctttc-attcttagtcgacgtgggacataatgactcacacttgatt 11576042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 38833149 - 38833094
Alignment:
Q  245 attttctccatttttagtcgatgtgggacataattactcacacttgatttccaaca 300  Q
    ||||||||||||| || ||||| || ||| ||||||||||||||||| ||||||||    
T  38833149 attttctccatttctaatcgatatgagacttaattactcacacttgaattccaaca 38833094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 7120544 - 7120590
Alignment:
Q  202 ttaagatattaggtatatgtgtcccctcttttatatatctaacattt 248  Q
    |||| |||||| ||||||||||| ||||||||||||||| |||||||    
T  7120544 ttaaaatattaagtatatgtgtcacctcttttatatatccaacattt 7120590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 1e-37; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 47680908 - 47680618
Alignment:
Q  11 ccaagaatatcctcctcaactgagactcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctga 110  Q
    |||| ||| ||| |||||| || || ||||||||||||||||||||||||  | ||||||||| ||||| ||||||||  ||||||||||||||||||||    
T  47680908 ccaacaatctccccctcaagtgtgagtcacccacatcactagcctgatcctcactaggatcccactcccgctcccccactgagcctaaccagggctctga 47680809  T
Q  111 tactagtttgttggggagtctg---------gggagcgacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaacc 201  Q
    ||| || ||||||||| |||||         ||||||||||||| | ||||| || ||||||| |||||||||||||||||| | |||   || ||||||    
T  47680808 taccag-ttgttggggtgtctgaggagcatcgggagcgacaatgagttaaacgtccaggaccaataagagacttagacaccaca-tctccacccaaaacc 47680711  T
Q  202 ttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgattt 294  Q
    |||||  || ||||||||| ||| |||||  |||||||  ||  ||| |||||||| || ||||||||||||||||| |||||||||| ||||    
T  47680710 ttaaggcatcaggtatatgggtctcctctcatatatattcaatgtttcctccatttataatcgatgtgggacataatcactcacacttaattt 47680618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 37 - 295
Target Start/End: Original strand, 11307475 - 11307741
Alignment:
Q  37 tcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtctg---- 132  Q
    |||| |||||||||||||||||||| | ||||| ||| ||||| | |||||||| ||||||||||| ||| |||||| ||||||||||||||||||        
T  11307475 tcacacacatcactagcctgatccacactaggaacccactcccgcacccccatcaagcctaaccagagctatgataccagtttgttggggagtctgggga 11307574  T
Q  133 -----gggagcgacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccc 227  Q
         ||||||||||||  | ||||  |  ||||||  ||||| |||||||||||| | |||   || ||||| |||||| || ||||||||||||||||    
T  11307575 gcactgggagcgacaataagctaaatgttcaggaccgttaagacacttagacaccaca-tctccacccaaaacattaagacatgaggtatatgtgtcccc 11307673  T
Q  228 tcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttc 295  Q
    ||| | ||||||| ||||||| |||||||| ||||||||||| |||| ||| |||||||||| |||||    
T  11307674 tctctcatatatccaacatttcctccatttatagtcgatgtgagacacaatcactcacacttaatttc 11307741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 11197198 - 11197095
Alignment:
Q  35 actcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtctggg 134  Q
    ||||||||||||||||||  ||||||| |  ||||||||||||||||||||||| | |||||||| | ||||||||||| |||||||| |||||||||||    
T  11197198 actcacccacatcactaggatgatccacaccaggatcccgctcccactcccccagcaagcctaacta-ggctctgataccagtttgtttgggagtctggg 11197100  T
Q  135 gagcg 139  Q
    |||||    
T  11197099 gagcg 11197095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 37 - 295
Target Start/End: Original strand, 11307186 - 11307452
Alignment:
Q  37 tcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtct----- 131  Q
    |||| |||||||||| | ||||||| | ||||| ||| ||||| | |||||||| |||| |||||||||| |||||| ||| |||||||||||||         
T  11307186 tcacacacatcactatcttgatccacactaggaacccactcccgcacccccatcaagcccaaccagggctatgataccagtatgttggggagtctaggga 11307285  T
Q  132 ----ggggagcgacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccc 227  Q
         ||||||||||||  | ||||  |  |||||||||||||||||||||||||| | |||   || ||||| |||||  || ||||||| ||||||||    
T  11307286 gcactgggagcgacaataagctaaatgttcaggaccactaagagacttagacaccaca-tctccacccaaaacattaaggcatcaggtatacgtgtcccc 11307384  T
Q  228 tcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttc 295  Q
    ||| ||||||||| ||  ||| |||||||| |||| |||||| |||||| | | ||||||||||||||    
T  11307385 tctcttatatatccaaggtttcctccatttctagttgatgtgagacatagtcagtcacacttgatttc 11307452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 47681126 - 47681032
Alignment:
Q  37 tcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtctg 132  Q
    ||||||||||||||||||||||||  | ||||||||| ||||| ||||||||  ||||||||| ||||||||||||  || |||||||||||||||    
T  47681126 tcacccacatcactagcctgatcctcactaggatcccactcccgctcccccactgagcctaactagggctctgatatcag-ttgttggggagtctg 47681032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 10396490 - 10396406
Alignment:
Q  217 tatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaacaa 301  Q
    |||| ||| ||||| ||||||||| ||||||| |||||||| ||||| || || |||||||| ||||||||||||||||||||||    
T  10396490 tatgggtctcctctcttatatatccaacatttcctccatttctagtcaatatgagacataatcactcacacttgatttccaacaa 10396406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 12718000 - 12718107
Alignment:
Q  20 tcctcctcaactgagactcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagttt 119  Q
    |||||||||| || |||| ||||||||||||||  ||||||||| |||||||| ||||||||||||||| | |||||||| | |||||| |||| | |||    
T  12718000 tcctcctcaagtgtgactaacccacatcactaggatgatccatactaggatcctgctcccactcccccagcaagcctaacta-ggctctaataccaattt 12718098  T
Q  120 gttggggag 128  Q
     ||||||||    
T  12718099 attggggag 12718107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 10396195 - 10396121
Alignment:
Q  227 ctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaacaa 301  Q
    |||| ||||||||  ||||||| |||||||| | ||||||||| |||||||| ||||||||||||||||||||||    
T  10396195 ctctcttatatattcaacatttcctccatttcttgtcgatgtgagacataatcactcacacttgatttccaacaa 10396121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 290
Target Start/End: Complemental strand, 11197381 - 11197227
Alignment:
Q  134 ggagcgacaatgggataaacctctaggacca-ctaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttt 232  Q
    |||||| ||||||| |||||  ||||||||| ||||||||   |||||||| |||||||||||||| ||| |||  | | ||| |||| ||| ||||| |    
T  11197381 ggagcggcaatgggctaaacacctaggaccagctaagagag--agacaccacactcttacccaaaaccct-aaggcaatgggtttatgggtctcctctct 11197285  T
Q  233 tatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttg 290  Q
    |||||||| ||| ||| |||||||| ||||||||||| | |||||| |||||||||||    
T  11197284 tatatatccaacgtttcctccatttctagtcgatgtgaggcataatcactcacacttg 11197227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 26473485 - 26473575
Alignment:
Q  24 cctcaactgagactcacccacatcactagcctgatccatattaggatcccgctcccact-cccccatcgagcctaaccagggctctgatac 113  Q
    |||||| || || |||||||||||||| |||||||||| |  |||||||||||||| || |||||| ||||| |||||| |||||||||||    
T  26473485 cctcaattgtgagtcacccacatcacttgcctgatccagacaaggatcccgctcccgctccccccaccgagcttaaccaaggctctgatac 26473575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 291
Target Start/End: Complemental strand, 51681650 - 51681538
Alignment:
Q  178 acaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataa 277  Q
    |||||| |||||||||||||| | |||||  | | |||||||| ||||||||| |||||||| | |||||| ||| |||  ||||| |||||||||||||    
T  51681650 acaccacactcttacccaaaatc-ttaaggcaatgggtatatgagtcccctctcttatatatttcacatttcctcaattcctagtcaatgtgggacataa 51681552  T
Q  278 ttactcacacttga 291  Q
    | ||| ||||||||    
T  51681551 tcacttacacttga 51681538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 53468095 - 53468164
Alignment:
Q  231 tttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaaca 300  Q
    |||||||||  ||||||| |||||||| || |||||||| ||||| || |||||||||||||||||||||    
T  53468095 tttatatattcaacatttgctccatttctaatcgatgtgagacattatcactcacacttgatttccaaca 53468164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 1868097 - 1868049
Alignment:
Q  245 attttctccatttttagtcgatgtgggacataattactcacacttgatt 293  Q
    |||| ||||||| ||||||||||||||||||||| ||||||||||||||    
T  1868097 atttcctccattcttagtcgatgtgggacataatcactcacacttgatt 1868049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 291
Target Start/End: Complemental strand, 8446022 - 8445855
Alignment:
Q  123 ggggagtctggggagcgacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtg 222  Q
    ||||||||  ||||| | ||||||| ||||| || ||||| | |||||||||||||| ||| | |||   || |||||||||||  || | |||||||||    
T  8446022 ggggagtcacgggaggggcaatgggttaaacttccaggacaaataagagacttagacgccaca-tctccacctaaaaccttaaggcatcatgtatatgtg 8445924  T
Q  223 tcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttga 291  Q
    ||| |||| ||||||||| ||||||| || |||| |  | |||||||||||||||| ||| | ||||||    
T  8445923 tcctctctcttatatatccaacatttccttcattgtgtgccgatgtgggacataatcacttagacttga 8445855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 11196990 - 11196922
Alignment:
Q  233 tatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaacaa 301  Q
    |||||||| ||| ||| |||||||| |||| |||||||||||||||||||||  ||||||||| |||||    
T  11196990 tatatatccaacgtttcctccatttctagttgatgtgggacataattactcaagcttgatttctaacaa 11196922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 291
Target Start/End: Original strand, 48635115 - 48635203
Alignment:
Q  203 taagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttga 291  Q
    |||||||||| ||||||| ||| ||||| |||||| |  || |||| |||||||| || || |||||||||||||| ||||||||||||    
T  48635115 taagatattaagtatatgagtctcctctcttatatgttcaatatttcctccatttataatcaatgtgggacataatcactcacacttga 48635203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 922532 - 922410
Alignment:
Q  176 agacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacat 275  Q
    |||||||| ||||||| |||||  ||| |||| | | ||| |||| ||| ||||| || |||||||||| ||| || ||||| |||||||||||||||||    
T  922532 agacaccacactcttatccaaacccct-aagacaatgggtttatgggtctcctctcttctatatctaacgtttgcttcatttctagtcgatgtgggacat 922434  T
Q  276 aattactcacacttgatttccaacaa 301  Q
    ||  || | |||||||||||||||||    
T  922433 aa--acactcacttgatttccaacaa 922410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 296
Target Start/End: Complemental strand, 51681521 - 51681246
Alignment:
Q  24 cctcaactgagactcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttg 123  Q
    |||||| || || |||||||||||||| |||||||||| ||||||||| | ||||  | ||||||  ||||||||| || |||||||||  || ||||||    
T  51681521 cctcaagtgtgagtcacccacatcactggcctgatccacattaggatctcactcc--cgcccccactgagcctaacgagagctctgatatcag-ttgttg 51681425  T
Q  124 gggagtctggg--------gagcgacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggt 215  Q
    ||||||| |||        ||||| |||||||  |||  |  ||||||  |||||||||||||||||| | |||   || ||||||||||| |||  |||    
T  51681424 gggagtcggggagcttcgagagcggcaatgggtcaaatgttcaggacctgtaagagacttagacaccaca-tctccacccaaaaccttaaggtatatggt 51681326  T
Q  216 atatgtgt-cccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttcc 296  Q
    ||||| || ||||| | ||||||||| ||  |||||||||||  |||||||  || |||||||| || ||||||||||||||    
T  51681325 atatgggtccccctttcttatatatccaatgttttctccattcctagtcga--tgagacataatcacccacacttgatttcc 51681246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 34946155 - 34946279
Alignment:
Q  176 agacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacat 275  Q
    |||||||| |||||||||||||| ||| |||  || |||| || | ||| ||||  ||| ||||  ||| ||| ||||||||  ||| ||||||||||||    
T  34946155 agacaccacactcttacccaaaatcct-aaggcatgaggtttacgagtctcctcccttaaatattcaacgtttgctccatttcaagttgatgtgggacat 34946253  T
Q  276 aattactcacacttgatttccaacaa 301  Q
     || ||||||||||||||||||||||    
T  34946254 tatcactcacacttgatttccaacaa 34946279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 301
Target Start/End: Original strand, 34946468 - 34946572
Alignment:
Q  196 aaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttc 295  Q
    |||||| ||||| || |||| |||| ||| | ||| ||| ||||| ||| ||| |||||||| ||||||||||| ||||| || || |||||||||||||    
T  34946468 aaaaccctaagacatcaggtttatgggtctcttctcttaaatatccaacgtttgctccatttctagtcgatgtgagacattatcac-cacacttgatttc 34946566  T
Q  296 caacaa 301  Q
    ||||||    
T  34946567 caacaa 34946572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 8445803 - 8445755
Alignment:
Q  65 taggatcccgctcccactcccccatcgagcctaaccagggctctgatac 113  Q
    ||||||||| ||||| || ||||| ||||||||||||||||||||||||    
T  8445803 taggatcccactcccgctaccccaccgagcctaaccagggctctgatac 8445755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 34946287 - 34946374
Alignment:
Q  25 ctcaactgagactcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatac 113  Q
    ||||| || |||||||||||||||||||  ||||||| | || ||||||  ||||||||||||| | | |||||||| |||||||||||    
T  34946287 ctcaagtgtgactcacccacatcactaggatgatccaaactatgatcccagtcccactcccccagcaaacctaacca-ggctctgatac 34946374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 242 - 299
Target Start/End: Original strand, 2917523 - 2917580
Alignment:
Q  242 aacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaac 299  Q
    ||||||| |||||||| ||||||| ||| ||||| || ||||| ||||||||||||||    
T  2917523 aacatttactccatttatagtcgacgtgagacatcatcactcagacttgatttccaac 2917580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 31973496 - 31973613
Alignment:
Q  10 tccaagaatatcctcctcaactgagactcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctg 109  Q
    ||||| ||| ||| |||||| || ||||||| ||||||||||| |||||||| | |||||||||||||||||||| |||||||||||||||| |||| ||    
T  31973496 tccaacaatctccccctcaagtgtgactcactcacatcactagtctgatccacactaggatcccgctcccactcctccatcgagcctaaccaaggctttg 31973595  T
Q  110 atactagtttgttgggga 127  Q
    |||| | |||||||||||    
T  31973596 ataccaatttgttgggga 31973613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 34666002 - 34666091
Alignment:
Q  42 cacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtct 131  Q
    |||||||||||  ||||||| | |||||||||||||||||  ||||| |||||||||||||| ||||||||| |||||||||||||||||    
T  34666002 cacatcactagtgtgatccacactaggatcccgctcccaccaccccagcgagcctaaccaggactctgataccagtttgttggggagtct 34666091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 212 - 296
Target Start/End: Complemental strand, 15327935 - 15327851
Alignment:
Q  212 aggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttcc 296  Q
    ||||||||| ||||||||| ||||||||||||| ||| |||||||  ||||||||||| |||||||| |||||||||||||||||    
T  15327935 aggtatatgggtcccctctcttatatatctaacgtttcctccattcctagtcgatgtgagacataatcactcacacttgatttcc 15327851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 43834491 - 43834364
Alignment:
Q  11 ccaagaatatcctcctcaactgagactcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctga 110  Q
    |||| ||| ||| |||||| || || |||| |||||||||||||||||||| | ||||||||| || || ||||||||||| |||||||||||| |||||    
T  43834491 ccaacaatctccacctcaagtgtgagtcactcacatcactagcctgatccacactaggatcccacttccgctcccccatcgggcctaaccagggttctga 43834392  T
Q  111 tactagtttgttggggagtctggggagcg 139  Q
    ||| || ||||||||||||  ||||||||    
T  43834391 taccag-ttgttggggagttaggggagcg 43834364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 139 - 291
Target Start/End: Complemental strand, 43834646 - 43834495
Alignment:
Q  139 gacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatata 238  Q
    ||||||||  ||||| ||||||||||  ||||||||||||| ||| | |||    |||||||||||||| |||||||||||| ||||||||| |||||||    
T  43834646 gacaatggactaaacgtctaggaccatcaagagacttagacgccaca-tctccatcaaaaaccttaagacattaggtatatgggtcccctctcttatata 43834548  T
Q  239 tctaacattttctccatttttagtcgatgtgggacataattactcacacttga 291  Q
    |  |||||||  |||||| |||| ||||||| || ||||| ||||||||||||    
T  43834547 ttcaacatttcatccattcttagccgatgtgagatataatcactcacacttga 43834495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 12466397 - 12466273
Alignment:
Q  176 agacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacat 275  Q
    |||||||| ||||||||| ||||||||||||  |||| ||||||  | || ||||  |||||||| ||| |||||||||||| |||| ||||||||||||    
T  12466397 agacaccacactcttacc-aaaaaccttaaggcattaagtatataggcccactctcgtatatatccaacgttttctccatttctagttgatgtgggacat 12466299  T
Q  276 aattactcacacttgatttccaacaa 301  Q
    ||| ||| |||||||||||| |||||    
T  12466298 aatcacttacacttgatttctaacaa 12466273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 118 - 301
Target Start/End: Original strand, 31973322 - 31973503
Alignment:
Q  118 ttgttggggagtctggggagcgacaatgggataaacctctagga-ccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggta 216  Q
    ||||| |||||||||||||||  || |||| ||||| ||||| | || ||||||||   ||||| || |||||||||||||| | |||||  ||  ||||    
T  31973322 ttgttagggagtctggggagcagcagtgggctaaacgtctagaatccgctaagagag--agacatcacactcttacccaaaatc-ttaaggcatcgggta 31973418  T
Q  217 tatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaacaa 301  Q
    |||||||  ||||| |||||||| ||||  || |||||||| |||||| |||| |||||||| ||||||||||||||||||||||    
T  31973419 tatgtgtatcctctcttatatatgtaacggttcctccatttctagtcggtgtgagacataatcactcacacttgatttccaacaa 31973503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 118 - 289
Target Start/End: Original strand, 26231641 - 26231809
Alignment:
Q  118 ttgttggggagtctggggagcgacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtat 217  Q
    ||||||||||||| ||  |||| ||||||| ||||| |   ||||||||||||||||| ||||||| | |||   || ||||||||||| || | |||||    
T  26231641 ttgttggggagtccggaaagcggcaatgggctaaacgttatggaccactaagagacttggacaccaca-tctccacccaaaaccttaaggtaattggtat 26231739  T
Q  218 atgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacactt 289  Q
    ||| ||||||||| ||||||||  ||||||| ||| |||  || ||||||||||||||||||||| ||||||    
T  26231740 atgggtcccctctcttatatat--aacatttcctcaattcctaatcgatgtgggacataattacttacactt 26231809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 230 - 301
Target Start/End: Original strand, 34665906 - 34665977
Alignment:
Q  230 ttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaacaa 301  Q
    ||||||||||||||||||| ||| |||| |||||||||||||| ||||| |||||||| |||||||||||||    
T  34665906 ttttatatatctaacatttcctcaatttctagtcgatgtgggatataatcactcacacatgatttccaacaa 34665977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 47159167 - 47159265
Alignment:
Q  34 gactcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtctg 132  Q
    |||||| ||||||||||||  ||||||| | ||||||||| ||| ||||| | ||||||||||||||||| ||||||||| | ||||||||| ||||||    
T  47159167 gactcatccacatcactaggatgatccacactaggatcccactcacactctctcatcgagcctaaccaggactctgataccaatttgttgggaagtctg 47159265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 5821982 - 5821882
Alignment:
Q  37 tcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtctgggga 136  Q
    ||||||||||||||||||||||||| || |||||||||||||| | ||||||  |||  ||| |||||||||||||| || ||||||| ||||| |||||    
T  5821982 tcacccacatcactagcctgatccaaataaggatcccgctcccgc-cccccactgagtttaatcagggctctgataccag-ttgttggagagtccgggga 5821885  T
Q  137 gcg 139  Q
    |||    
T  5821884 gcg 5821882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 294
Target Start/End: Original strand, 27686552 - 27686685
Alignment:
Q  160 gaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccattttt 259  Q
    ||||| |||||||||||||||||| |||||||||||||| ||| |||  |  ||| ||||| ||   |||| ||||||||||||  ||| |||||||  |    
T  27686552 gaccaataagagacttagacaccacactcttacccaaaa-cctcaagtcaacagggatatgagttttctctcttatatatctaatgtttcctccattcct 27686650  T
Q  260 agtcgatgtgggacataattactcacacttgattt 294  Q
    ||||||||||| ||||||| |||||||||| ||||    
T  27686651 agtcgatgtggaacataatcactcacacttaattt 27686685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 212 - 296
Target Start/End: Original strand, 4392271 - 4392355
Alignment:
Q  212 aggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttcc 296  Q
    ||||||||| ||| ||||| ||||||||| ||  ||| |||||||  ||||||||||| |||||||| |||||||||||||||||    
T  4392271 aggtatatgggtctcctctgttatatatccaatgtttcctccattcatagtcgatgtgagacataatcactcacacttgatttcc 4392355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 25732863 - 25732908
Alignment:
Q  343 ctcatggactcataaactcatcatacacttgtgagtctatacgagt 388  Q
    ||||||||||||||||||| ||||| |||||||||||||| |||||    
T  25732863 ctcatggactcataaactcgtcatagacttgtgagtctatgcgagt 25732908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 4392093 - 4392163
Alignment:
Q  39 acccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctga 110  Q
    ||||||||||||||||||||||| | ||||||||  ||||  || ||||| ||||||||||| |||||||||    
T  4392093 acccacatcactagcctgatccacactaggatccaactcctgct-ccccaccgagcctaacccgggctctga 4392163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 31973746 - 31973793
Alignment:
Q  253 catttttagtcgatgtgggacataattactcacacttgatttccaaca 300  Q
    |||||||||||||| | ||||||||| || ||||||||||||||||||    
T  31973746 catttttagtcgatatcggacataatcacgcacacttgatttccaaca 31973793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 291
Target Start/End: Original strand, 4753262 - 4753344
Alignment:
Q  209 attaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttga 291  Q
    |||||||||||  |||||||| |||||||||| |||||||  ||||||  || ||||||| | ||||||| |||| |||||||    
T  4753262 attaggtatataggtcccctcctttatatatccaacatttcatccattcctaatcgatgtagtacataatgactcgcacttga 4753344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 8179750 - 8179824
Alignment:
Q  214 gtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacact 288  Q
    ||||||| ||| ||| | ||||||||| ||||||||||||||||| | |||||||| ||| |||| ||| |||||    
T  8179750 gtatatgagtctcctatcttatatatcaaacattttctccattttaaatcgatgtgtgacttaatcactaacact 8179824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 25294877 - 25294947
Alignment:
Q  223 tcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatt 293  Q
    |||||||| ||||||||| ||  ||| |||||||  ||| | |||||||||||||| ||||||||||||||    
T  25294877 tcccctctcttatatatccaatgtttcctccattcctagccaatgtgggacataatcactcacacttgatt 25294947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 24 - 286
Target Start/End: Complemental strand, 40053435 - 40053167
Alignment:
Q  24 cctcaactgagactcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttg 123  Q
    |||||| || || |||||||||||||||||||||||||   ||||||||| || || |||||| |||||||||||  ||||||||||||| | || || |    
T  40053435 cctcaagtgtgagtcacccacatcactagcctgatccaggctaggatcccacttccgctcccc-atcgagcctaatgagggctctgataccaatt-gtag 40053338  T
Q  124 gggagtctggggagcgac---------aatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattagg 214  Q
    |||||||  |||||||||         |||| | ||||| |  | |||||| ||||||||||||| ||| | |||   || |||||||||||| || | |    
T  40053337 gggagtcctgggagcgacgggagcggcaatgagctaaacgttcaagaccaccaagagacttagacgccaca-tctccacctaaaaccttaagacatcatg 40053239  T
Q  215 tatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcaca 286  Q
    |||||| ||||||||| ||||| |||||||||||||||||||||||| ||||||   |||||||||||||||    
T  40053238 tatatgggtcccctctcttataaatctaacattttctccatttttagccgatgtaaaacataattactcaca 40053167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 40053531 - 40053444
Alignment:
Q  214 gtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaacaa 301  Q
    ||||||| || |||||| ||||||||| ||||||| |||||||||||| |||||||||||||||||| |||||||||||| |||||||    
T  40053531 gtatatgggttccctctcttatatatccaacatttcctccatttttagccgatgtgggacataattattcacacttgattcccaacaa 40053444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 13792587 - 13792662
Alignment:
Q  226 cctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaacaa 301  Q
    ||||| ||||||||| || |||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  13792587 cctctcttatatatcaaatatttcctccatttctagttgatgtgggacataatcactcacacttgatttccaacaa 13792662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 196 - 291
Target Start/End: Complemental strand, 19548239 - 19548144
Alignment:
Q  196 aaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttga 291  Q
    |||||||||||| ||||| |||||| ||| ||||| ||||||||| ||||||| ||| |||| |||||||||||||||||||  |||||| |||||    
T  19548239 aaaaccttaagacattagatatatgggtctcctctcttatatatccaacatttcctctatttctagtcgatgtgggacataaccactcacgcttga 19548144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 161 - 294
Target Start/End: Original strand, 11727675 - 11727807
Alignment:
Q  161 accactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccattttta 260  Q
    |||||||||||||||||||||||  ||||    |||||||||||||  || | | |||| |||||||| | || |||||||||| |||||||||||| ||    
T  11727675 accactaagagacttagacaccat-ctctccatcaaaaaccttaaggcatcaaggatatatgtcccctatcttttatatctaacgttttctccatttcta 11727773  T
Q  261 gtcgatgtgggacataattactcacacttgattt 294  Q
    ||| |||| | |||||||||||||||||| ||||    
T  11727774 gtcaatgtagaacataattactcacacttaattt 11727807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 65 - 172
Target Start/End: Original strand, 13792229 - 13792337
Alignment:
Q  65 taggatcccgctcccactccccc-atcgagcctaaccagggctctgatactagtttgttggggagtctggggagcgacaatgggataaacctctagga-c 162  Q
    ||||||||||||||||||||||| | | |||||||| ||| ||||||||| ||||||||||||||||| || |||| ||| ||| ||||| ||||||| |    
T  13792229 taggatcccgctcccactccccccagcaagcctaactagg-ctctgataccagtttgttggggagtctaggaagcggcaaggggttaaacgtctaggacc 13792327  T
Q  163 cactaagaga 172  Q
    ||||||||||    
T  13792328 cactaagaga 13792337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 28226451 - 28226327
Alignment:
Q  176 agacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacat 275  Q
    |||||||| ||||||||| |||| ||| |||| | |  || |||| ||| ||||| ||||||||| ||| ||| |||||||| |||||||||||||||||    
T  28226451 agacaccacactcttacctaaaaccct-aagacaatgtgtttatgggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtgggacat 28226353  T
Q  276 aattactcacacttgatttccaacaa 301  Q
     |  ||||||||||||||||||||||    
T  28226352 taacactcacacttgatttccaacaa 28226327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 30219944 - 30220048
Alignment:
Q  196 aaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttc 295  Q
    |||||| ||||| | | ||| |||| ||| ||||| |||  |||| ||||||| ||||| || ||||||||||||||||||||  |||||||||||||||    
T  30219944 aaaaccctaagacaattggtttatgggtctcctctcttaagtatccaacatttcctccagttctagtcgatgtgggacataatcgctcacacttgatttc 30220043  T
Q  296 caaca 300  Q
    |||||    
T  30220044 caaca 30220048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 28226599 - 28226526
Alignment:
Q  65 taggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtctggggagcg 139  Q
    ||||||||||||||||||| |||| | || ||||| ||| ||||||||| ||||||||||||||| |||||||||    
T  28226599 taggatcccgctcccactctcccagcaagtctaactagg-ctctgataccagtttgttggggagtttggggagcg 28226526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 39334465 - 39334533
Alignment:
Q  226 cctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgattt 294  Q
    |||||||| |||||| ||||||| ||| ||||||||| ||||| |||| |||| |||||||||||||||    
T  39334465 cctcttttttatatccaacatttcctcgatttttagtagatgtaggacttaatcactcacacttgattt 39334533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 35448708 - 35448783
Alignment:
Q  226 cctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaacaa 301  Q
    ||||| ||||||||| ||| ||| ||| |||| ||||||||||| |||||||| |  |||||||||||||||||||    
T  35448708 cctctcttatatatcaaacgtttcctctatttctagtcgatgtgagacataatcatacacacttgatttccaacaa 35448783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 19547935 - 19547869
Alignment:
Q  225 ccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttga 291  Q
    |||||| ||||||||| |||||||  ||||||| |||||||| |  |||||||||||||||||||||    
T  19547935 ccctctcttatatatccaacatttcttccatttctagtcgatataagacataattactcacacttga 19547869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 28226768 - 28226645
Alignment:
Q  176 agacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacat 275  Q
    |||||||| ||||||||| |||||||| |||| | | ||| |||| ||| ||||| ||||||||| || |||| | |||||| | ||||||||| || ||    
T  28226768 agacaccacactcttacc-aaaaacct-aagacaatgggtttatgagtctcctctcttatatatccaatatttgccccatttcttgtcgatgtgtgatat 28226671  T
Q  276 aattactcacacttgatttccaacaa 301  Q
     || | ||||||||||||||||||||    
T  28226670 tatcagtcacacttgatttccaacaa 28226645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 40801134 - 40801219
Alignment:
Q  193 ccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataat 278  Q
    |||||||| |||||| |||||||||||   ||  |||| ||||||||| ||| ||||||| |||| || |||||||| ||||||||    
T  40801134 ccaaaaacattaagacattaggtatataaatcttctctcttatatatcaaacgttttctcaatttctaatcgatgtgagacataat 40801219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 6e-24; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 21416326 - 21416430
Alignment:
Q  34 gactcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtctgg 133  Q
    |||||||||||||||||||  ||||||| | |||||||||||||||||||||||| | |||||||| | ||||||||||| | |||||||||||||||||    
T  21416326 gactcacccacatcactaggatgatccacactaggatcccgctcccactcccccagcaagcctaacta-ggctctgataccaatttgttggggagtctgg 21416424  T
Q  134 ggagcg 139  Q
    | ||||    
T  21416425 gaagcg 21416430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 196 - 294
Target Start/End: Complemental strand, 2463540 - 2463442
Alignment:
Q  196 aaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgattt 294  Q
    |||||||||||  || ||||||||||||||||||| ||||||||| || |||| |||||||| ||  | ||||||||||||||||||||||||||||||    
T  2463540 aaaaccttaaggcatcaggtatatgtgtcccctctcttatatatccaatatttcctccatttctaaccaatgtgggacataattactcacacttgattt 2463442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 196 - 291
Target Start/End: Original strand, 7631268 - 7631364
Alignment:
Q  196 aaaaccttaagatattaggtatatgtg-tcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttga 291  Q
    |||| ||||||  |||||||||||| | || ||||| ||||||||| ||||||||||||||||| |||||||||||||| ||| |||||||||||||    
T  7631268 aaaagcttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtcgatgtgggacttaactactcacacttga 7631364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 23568901 - 23569000
Alignment:
Q  39 acccacatcactagcctgatccatattaggatcccgctcccactcccccatc-gagcctaaccagggctctgatactagtttgttggggagtctggggag 137  Q
    ||||||||||||||  ||||||| | |||||||| ||||||||||||||| |  |||||||||| |||| |||||| |||||||||||||||||||||||    
T  23568901 acccacatcactaggatgatccacactaggatcctgctcccactcccccagcaaagcctaacca-ggctatgataccagtttgttggggagtctggggag 23568999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 27597958 - 27597852
Alignment:
Q  34 gactcacccacatcactagcctgatccatattaggatccc--gctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtct 131  Q
    |||||||||||||||||||  ||||||| | |||| ||||  ||||||||||||||| | ||||||| |||| ||||||||| ||||| |||||||||||    
T  27597958 gactcacccacatcactaggatgatccacactagggtcccccgctcccactcccccagcaagcctaatcagg-ctctgataccagtttattggggagtct 27597860  T
Q  132 ggggagcg 139  Q
    ||||||||    
T  27597859 ggggagcg 27597852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 37 - 294
Target Start/End: Complemental strand, 2463417 - 2463154
Alignment:
Q  37 tcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtc------ 130  Q
    ||||||| ||||||||||| ||||| |  | |||||| |||||||||| ||||||||||||||||||| |||||||| |  |||||| ||||||          
T  2463417 tcacccatatcactagcctaatccacacgatgatcccactcccactcctccatcgagcctaaccagggttctgatacca-cttgttgaggagtccaggga 2463319  T
Q  131 ---tggggagcgacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccc 227  Q
       | |||| || |||| || ||||| || ||||||||| ||||||| |||||||| |  || | || |||||||| ||   ||||||||||| ||||      
T  2463318 gcgtcgggaacggcaataggctaaacatccaggaccacttagagactaagacaccaca-gctcatcc-aaaacctttaggctttaggtatatgggtccat 2463221  T
Q  228 tcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgattt 294  Q
    ||| ||||||||| ||||||| |||  ||| ||||||||||| |||||||| |||||||||| ||||    
T  2463220 tctcttatatatccaacatttcctcattttctagtcgatgtgagacataatcactcacacttaattt 2463154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 8802475 - 8802387
Alignment:
Q  24 cctcaactgagactcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatac 113  Q
    |||||| || || ||| ||||||||||||||||||||||| ||||||||||||||| || |||||  ||||||||||| |||||||||||    
T  8802475 cctcaagtgtgaatcagccacatcactagcctgatccatactaggatcccgctcccgct-ccccactgagcctaaccatggctctgatac 8802387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 11776410 - 11776514
Alignment:
Q  196 aaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttc 295  Q
    ||||||||||| ||||| ||||||| ||||||||| ||||||||  ||  ||| |||||||  |||| ||||||||||||||| |||||||||||| | |    
T  11776410 aaaaccttaaggtattatgtatatgggtcccctctcttatatattcaatgtttcctccattcctagttgatgtgggacataatcactcacacttgaatcc 11776509  T
Q  296 caaca 300  Q
    |||||    
T  11776510 caaca 11776514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 23578080 - 23578158
Alignment:
Q  209 attaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacac 287  Q
    |||| ||||||||||| ||||| ||||||||| ||| |||||||||||| || |||||||||||| |||| ||||||||    
T  23578080 attaagtatatgtgtcacctctcttatatatccaacgttttctccatttctactcgatgtgggacttaatcactcacac 23578158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 36675252 - 36675183
Alignment:
Q  232 ttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaacaa 301  Q
    ||||||||| ||| |||||||||||| ||||||||||||||||| || ||||||| ||||||| ||||||    
T  36675252 ttatatatccaacgttttctccatttatagtcgatgtgggacattatcactcacatttgattttcaacaa 36675183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 196 - 299
Target Start/End: Complemental strand, 27598080 - 27597977
Alignment:
Q  196 aaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttc 295  Q
    |||||| ||||| | | ||| |||| ||| ||||| ||||||||| ||| ||| ||| |||| ||||||||||| ||||| || ||||||||||||||||    
T  27598080 aaaaccctaagacaatgggtttatgggtctcctctcttatatatccaacgtttgctcaatttatagtcgatgtgagacattatcactcacacttgatttc 27597981  T
Q  296 caac 299  Q
    ||||    
T  27597980 caac 27597977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 293
Target Start/End: Complemental strand, 48071510 - 48071384
Alignment:
Q  166 taagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcga 265  Q
    ||||||||||| ||| || ||||||| |||||| |||||||| | ||||| |||| || |||||| |||||||||     ||| |||||||  |||||||    
T  48071510 taagagacttaaacatcacactcttatccaaaa-ccttaagacaataggtttatgagttccctctcttatatatcctttgtttcctccattcctagtcga 48071412  T
Q  266 tgtgggacataattactcacacttgatt 293  Q
    ||||||||||||| ||| ||||||||||    
T  48071411 tgtgggacataatcactgacacttgatt 48071384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 301
Target Start/End: Complemental strand, 27938894 - 27938750
Alignment:
Q  155 tctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctcca 254  Q
    ||||||||||||||||||||| ||||||| | |||    | |||||||||||   ||||||||||| ||| ||| | ||||||||| |||  || ||| |    
T  27938894 tctaggaccactaagagactt-gacaccaca-tctacatccaaaaccttaaggctttaggtatatgagtctcctttcttatatatccaacgattcctcaa 27938797  T
Q  255 tttttagtcgatgtgggacataattactcacacttgatttccaacaa 301  Q
    |||| || |||||| ||||||||| |||||||||| |||||||||||    
T  27938796 ttttcagccgatgtcggacataatcactcacactttatttccaacaa 27938750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 11776252 - 11776346
Alignment:
Q  37 tcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtctgggga 136  Q
    |||||||||||||||||||||||||   ||||||||||||       ||||| ||||||||||||||| |||||||| || |||||||||||||  ||||    
T  11776252 tcacccacatcactagcctgatccacgctaggatcccgct-------ccccaccgagcctaaccagggttctgataccag-ttgttggggagtccaggga 11776343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 293
Target Start/End: Original strand, 21416185 - 21416301
Alignment:
Q  176 agacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacat 275  Q
    |||||||| |||||||||||||| ||| |||  | | ||| |||| ||| ||||| ||||||||| ||  |||  ||||| | |||| ||||||||||||    
T  21416185 agacaccacactcttacccaaaaccct-aaggcaatgggtttatgggtctcctctcttatatatccaatttttgttccatgtctagttgatgtgggacat 21416283  T
Q  276 aattactcacacttgatt 293  Q
    ||| ||||||||||||||    
T  21416284 aatcactcacacttgatt 21416301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 7631147 - 7631227
Alignment:
Q  51 agcctgatccatattaggatcccgctcccactccccc-atcgagcctaaccagggctctgatactagtttgttggggagtc 130  Q
    |||||||||||   ||||||||| ||| | ||||||| | ||||| ||||||||||||| |||| ||||||||||||||||    
T  7631147 agcctgatccaggctaggatcccactctcgctccccctaccgagcttaaccagggctctaataccagtttgttggggagtc 7631227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 28445226 - 28445297
Alignment:
Q  227 ctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaac 299  Q
    |||| ||||||||| || |||| ||||||| | |||||||||||||||| || ||||||| ||||||||||||    
T  28445226 ctctcttatatatccaatatttgctccattct-agtcgatgtgggacattatcactcacagttgatttccaac 28445297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 37204921 - 37204874
Alignment:
Q  416 aaacgattctatatgtgatttcactcatttttgccttctagactcgta 463  Q
    |||| |||||||  |||||| |||||||||||||||||||||||||||    
T  37204921 aaacaattctatgagtgattccactcatttttgccttctagactcgta 37204874  T

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Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 291
Target Start/End: Complemental strand, 45100279 - 45100184
Alignment:
Q  196 aaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttga 291  Q
    ||||| |||||| ||||| |||||| |||  |||| ||||||||  ||||||||||  |||  ||||| |||||| ||||||| ||||||||||||    
T  45100279 aaaactttaagacattagttatatgagtcatctctcttatatattcaacattttcttaattcctagtcaatgtggaacataatcactcacacttga 45100184  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 19495473 - 19495539
Alignment:
Q  196 aaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagt 262  Q
    ||||| ||||| | ||||||||||| |||| ||| |||||||||| |||||||| || |||||||||    
T  19495473 aaaacattaaggttttaggtatatgggtcctctcatttatatatccaacattttttctatttttagt 19495539  T

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Target: scaffold0548 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 37 - 295
Target Start/End: Original strand, 3964 - 4231
Alignment:
Q  37 tcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgttggggagtctgggga 136  Q
    |||| |||||||||| | ||||||| | ||||| ||| ||||| | |||||||| |||| |||||||||| |||||| ||| ||||||||||||| ||||    
T  3964 tcacacacatcactatcttgatccacactaggaacccactcccgcacccccatcaagcccaaccagggctatgataccagtatgttggggagtctaggga 4063  T
Q  137 gc---------gacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccc 227  Q
    ||         ||||||  | ||||  |  ||||||  ||||| |||||||||||| | |||   || ||||| |||||| || ||||||||||||||||    
T  4064 gcactgggagcgacaataagctaaatgttcaggaccgttaagacacttagacaccaca-tctccacccaaaacattaagacatgaggtatatgtgtcccc 4162  T
Q  228 tcttttatatatctaacatttt-ctccatttttagtcgatgtgggacataattactcacacttgatttc 295  Q
    ||| | ||||||| |||||||| |||||||| ||||||||||| |||| ||| |||||||||| |||||    
T  4163 tctctcatatatccaacattttcctccatttatagtcgatgtgagacacaatcactcacacttaatttc 4231  T

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Target: chr5 (Bit Score: 50; Significance: 4e-19; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 13112651 - 13112527
Alignment:
Q  176 agacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacat 275  Q
    |||||||| ||||||| |||||| |||||||| | | ||| |||| ||| ||||| ||||||||||||  ||| ||| |||| |||||||||||||| ||    
T  13112651 agacaccacactcttatccaaaa-ccttaagacaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatgtgggatat 13112553  T
Q  276 aattactcacacttgatttccaacaa 301  Q
     || ||||||||||||||||||||||    
T  13112552 tatcactcacacttgatttccaacaa 13112527  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 13042653 - 13042529
Alignment:
Q  176 agacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacat 275  Q
    |||||||| ||||||| |||||| |||||||  | | ||| |||| ||| ||||| ||||||||||||  ||| ||| |||| |||||||||||||| ||    
T  13042653 agacaccacactcttatccaaaa-ccttaaggcaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatgtgggatat 13042555  T
Q  276 aattactcacacttgatttccaacaa 301  Q
     || ||||||||||||||||||||||    
T  13042554 tatcactcacacttgatttccaacaa 13042529  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 133 - 293
Target Start/End: Complemental strand, 5963839 - 5963681
Alignment:
Q  133 gggagcgacaatgggataaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttt 232  Q
    ||||||| |||||||  |||| || ||||||| ||||||||||| |||||| |||||||||||||| |||||||  || || | |||| || |||||| |    
T  5963839 gggagcggcaatgggtcaaacgtccaggacca-taagagacttaaacaccacactcttacccaaaa-ccttaaggcatcagatctatgggttccctctct 5963742  T
Q  233 tatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatt 293  Q
    ||||||||     ||| |||||||  |||||||||||||||||||| || |||||||||||    
T  5963741 tatatatcctttgtttcctccattcctagtcgatgtgggacataatcacacacacttgatt 5963681  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 26420849 - 26420916
Alignment:
Q  234 atatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaacaa 301  Q
    ||||||| ||||||| |||||||| ||||||||||||||| ||| ||||||||||||| |||||||||    
T  26420849 atatatccaacatttcctccatttctagtcgatgtgggacttaactactcacacttgaattccaacaa 26420916  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 13042776 - 13042703
Alignment:
Q  227 ctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaaca 300  Q
    |||| ||||||||||||  ||| |||||||| |||| ||||||| ||||||| |||||||||||||||||||||    
T  13042776 ctctcttatatatctaatgtttgctccatttctagttgatgtggcacataatcactcacacttgatttccaaca 13042703  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 13043110 - 13042986
Alignment:
Q  176 agacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacat 275  Q
    ||||||||| ||||||||||||| ||| |||||  | ||| |||| ||| ||||| ||||||||| ||  ||| ||| |||| |||||||||||||| ||    
T  13043110 agacaccaatctcttacccaaaatcct-aagatgatgggtttatgggtctcctctcttatatatccaatgtttgctctatttctagtcgatgtgggagat 13043012  T
Q  276 aattactcacacttgatttccaacaa 301  Q
     || |||||| |||||||||||||||    
T  13043011 tatcactcactcttgatttccaacaa 13042986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 13112774 - 13112701
Alignment:
Q  227 ctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaaca 300  Q
    |||| ||||||||||||  ||| |||||||| |||| ||||||| ||||||| |||||||||||||||||||||    
T  13112774 ctctcttatatatctaatgtttgctccatttctagttgatgtggcacataatcactcacacttgatttccaaca 13112701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 13113106 - 13112982
Alignment:
Q  176 agacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacat 275  Q
    ||||||||| ||||||||||||| ||| |||||  | ||| |||| ||| ||||| ||||||||| ||  ||| ||| |||| |||||||||||||| ||    
T  13113106 agacaccaatctcttacccaaaatcct-aagatgatgggtttatgggtctcctctcttatatatccaatgtttgctctatttctagtcgatgtgggagat 13113008  T
Q  276 aattactcacacttgatttccaacaa 301  Q
     || |||||| |||||||||||||||    
T  13113007 tatcactcactcttgatttccaacaa 13112982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 41341451 - 41341350
Alignment:
Q  11 ccaagaatatcctcctcaactgagactcacccacatcactagcctgatccatattaggatcccgctcccactcccccatcgagcctaaccagggctctga 110  Q
    |||| ||| ||| |||||| || || ||||||||||||||||||||||||| | ||||||||||||| | || |||||  ||||||||||| |||||| |    
T  41341451 ccaataatctccccctcaagtgtgaatcacccacatcactagcctgatccacactaggatcccgctctcgct-ccccactgagcctaaccacggctctaa 41341353  T
Q  111 tac 113  Q
    |||    
T  41341352 tac 41341350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 3455921 - 3455872
Alignment:
Q  246 ttttctccatttttagtcgatgtgggacataattactcacacttgatttc 295  Q
    |||||||||||| ||||||||||| |||| ||| ||||||||||||||||    
T  3455921 ttttctccatttatagtcgatgtgagacacaatcactcacacttgatttc 3455872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 30886439 - 30886488
Alignment:
Q  149 taaacctctaggaccactaagagacttagacaccaaactcttacccaaaa 198  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||| |||||    
T  30886439 taaacgtctaggaccactaagagacttagacaccacactgttactcaaaa 30886488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 301
Target Start/End: Original strand, 27300753 - 27300808
Alignment:
Q  246 ttttctccatttttagtcgatgtgggacataattactcacacttgatttccaacaa 301  Q
    ||||||||||||||  ||||||||| ||||| | ||| ||||||||||||||||||    
T  27300753 ttttctccattttttatcgatgtggaacatattcacttacacttgatttccaacaa 27300808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 41340320 - 41340277
Alignment:
Q  250 ctccatttttagtcgatgtgggacataattactcacacttgatt 293  Q
    |||||||  |||||||||||||||||||| ||||||||||||||    
T  41340320 ctccattcctagtcgatgtgggacataatcactcacacttgatt 41340277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 5038525 - 5038439
Alignment:
Q  212 aggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaa 298  Q
    ||||||||| || | |||| ||||||||  ||| ||| |||||||| |||   | ||| ||||||||||||||||||||||||||||    
T  5038525 aggtatatgagttctctctattatatattcaacgtttcctccatttctagcttacgtgagacataattactcacacttgatttccaa 5038439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 27894144 - 27894190
Alignment:
Q  253 catttttagtcgatgtgggacataattactcacacttgatttccaac 299  Q
    |||||||| |||||||| |||||||| ||| ||||||||||||||||    
T  27894144 catttttaatcgatgtgagacataatcactaacacttgatttccaac 27894190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 464
Target Start/End: Complemental strand, 1683797 - 1683752
Alignment:
Q  419 cgattctatatgtgatttcactcatttttgccttctagactcgtaa 464  Q
    ||||||||||  ||||| ||||||||||| ||||||||||||||||    
T  1683797 cgattctatacatgattccactcatttttaccttctagactcgtaa 1683752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 13112933 - 13112861
Alignment:
Q  67 ggatcccgctcccactcccccatcgagcctaaccagggctctgatactagtttgtt-ggggagtctggggagcg 139  Q
    ||||||||||| |||| ||||| | |||||||  ||| ||||||||| |||||||| |||||||||||||||||    
T  13112933 ggatcccgctctcacttccccagcaagcctaagaagg-ctctgataccagtttgttgggggagtctggggagcg 13112861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 34103600 - 34103543
Alignment:
Q  245 attttctccatttttagtcgatgtgggacataattactcacacttgatt-tccaacaa 301  Q
    |||| |||||||| || ||||||||| ||||||| |||||||||||||| ||||||||    
T  34103600 atttcctccatttctattcgatgtggaacataatcactcacacttgattatccaacaa 34103543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 13451 - 13360
Alignment:
Q  209 attaggtatatgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaaca 300  Q
    |||||||||||| ||| ||||| || || ||||||||||| |||||||| ||||||||||| ||| |||| | |||||||||||||||||||    
T  13451 attaggtatatgggtcacctctcttttaaatctaacatttcctccatttctagtcgatgtgtgacttaatcattcacacttgatttccaaca 13360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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