View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_low_12 (Length: 428)
Name: NF17978_low_12
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 254 - 414
Target Start/End: Complemental strand, 22122314 - 22122154
Alignment:
| Q |
254 |
cagagcatatgatcgagctgcgataaagtttcgtggcgtggatgcggatattaatttcaatgtcagtgattatgatgaagatataaagcaggtttgtgag |
353 |
Q |
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| T |
22122314 |
cagagcatatgatcgagctgcgataaagtttcgtggcgtggatgcggatattaatttcaatgtcagtgattatgatgaagatataaagcaggtttgtgag |
22122215 |
T |
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| Q |
354 |
aatttgttattactaatgttgtgttgatcttgtttaaaatctaattgtaagttagtataat |
414 |
Q |
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| T |
22122214 |
aatttgttattactaatgttgtgttgatcttgtttaaaatctaattgtaagttagtataat |
22122154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 254 - 414
Target Start/End: Original strand, 40512159 - 40512319
Alignment:
| Q |
254 |
cagagcatatgatcgagctgcgataaagtttcgtggcgtggatgcggatattaatttcaatgtcagtgattatgatgaagatataaagcaggtttgtgag |
353 |
Q |
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| T |
40512159 |
cagagcatatgatcgagctgcgataaagtttcgtggcgtggatgcggatattaatttcaatgtcagtgattatgatgaagatataaagcaggtttgtgag |
40512258 |
T |
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| Q |
354 |
aatttgttattactaatgttgtgttgatcttgtttaaaatctaattgtaagttagtataat |
414 |
Q |
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| T |
40512259 |
aatttgttattactaatgttgtgttgatcttgtttaaaatctaattgtaagttagtataat |
40512319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 155
Target Start/End: Complemental strand, 22122448 - 22122413
Alignment:
| Q |
120 |
caggtggatttgataccgcgcatgctgcggcaaggt |
155 |
Q |
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| T |
22122448 |
caggtggatttgataccgcgcatgctgcggcaaggt |
22122413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 155
Target Start/End: Original strand, 40512025 - 40512060
Alignment:
| Q |
120 |
caggtggatttgataccgcgcatgctgcggcaaggt |
155 |
Q |
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| T |
40512025 |
caggtggatttgataccgcgcatgctgcggcaaggt |
40512060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 40511923 - 40511954
Alignment:
| Q |
18 |
aaatcattactgattaagtgattatttgagac |
49 |
Q |
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| T |
40511923 |
aaatcattactgattaagtgattatttgagac |
40511954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 350
Target Start/End: Original strand, 39644458 - 39644554
Alignment:
| Q |
254 |
cagagcatatgatcgagctgcgataaagtttcgtggcgtggatgcggatattaatttcaatgtcagtgattatgatgaagatataaagcaggtttgt |
350 |
Q |
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| T |
39644458 |
cagagcctatgatcgagctgctataaagtttaggggacttgatgctgacattaatttcaatctagttgagtatgaggaagatatgaatcaggtttgt |
39644554 |
T |
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