View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_low_17 (Length: 395)
Name: NF17978_low_17
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 24 - 395
Target Start/End: Original strand, 38241442 - 38241815
Alignment:
| Q |
24 |
tgcgaggaaaatctaacagttataagctggctaagnnnnnnn-caaattacgaaaacaaagcatcccaacgattactacattcattgtagcatgcaatca |
122 |
Q |
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||||||||||||||||||| | ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
38241442 |
tgcgaggaaaatctaacagatttaagctgactaagcaaaaaaacaaattacgaaaacaaagcatcccaacgattactacgttcattgtagcacgcaatca |
38241541 |
T |
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| Q |
123 |
ctt-aacaaattgtgccattctccaatcacacatacaagactcaacctacataattatgcagatcactctaatgagagaccctgcacaaatcctttccca |
221 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38241542 |
ctttaacaaattgtgccattctccaatcacacatacaagactcaacctacataattatgcagatcactctaatgagagaccctgcacaaatcctttccca |
38241641 |
T |
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| Q |
222 |
aaaacttgcagccacacttaaataattaaaccttgcaccaattacgtaaatgaaagtacattaggttatgaaaaagtacttctgttttaaatgcaatttg |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38241642 |
aaaacttgcagccacacttaaataattaaaccttgcaccaattacataaatgaaagtacattaggttatgaaaaagtacttctgttttaaatgcaatttg |
38241741 |
T |
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| Q |
322 |
tctacttcaaactacacttagaaaattcactttttctaatctcattaggatatgtaaattgcataaactatgtt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
38241742 |
tctacttcaaactacacttagaaaattcactttttctaatctcattaggatatgaaaattgcataaattatgtt |
38241815 |
T |
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