View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_low_19 (Length: 378)
Name: NF17978_low_19
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 63 - 368
Target Start/End: Original strand, 32425982 - 32426288
Alignment:
| Q |
63 |
ggtttattcgaaagttaagtgtcatagtttattaaaacagaattgtctgatatacttcattaagtataatagtttattagtnnnnnnntatatttatctg |
162 |
Q |
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| T |
32425982 |
ggtttattcgaaagttaagtgtcatagtttattaaaacagaattgtctgatatacttcattaagtatcatagtttattagtaaaaaaatatatttatctg |
32426081 |
T |
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| Q |
163 |
atacacttcagttgaatagtcgtgagaaatttataatcatcatctttgtgatttgtctcacggaatgtctaactgtcaaccattattaattccattttct |
262 |
Q |
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| T |
32426082 |
atacacttcagttgaatagtcgtgagaaatttataatcatcatctttgtgatttgtcttacggaatgtctaactgtcaaccatgattaattccattttct |
32426181 |
T |
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| Q |
263 |
taactgaaagtgtaaacaaaattttc-nnnnnnntgtgtacagatcatggtcgttgattaatatgaaagagattcaaagtttgatcccgacaattaacac |
361 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32426182 |
taactgaaagtgtaaacaaaattttcaaaaaaaatgtgtacagatcatggtcgttgattaatatgaaagagattcaaagtttgatcccgacaattaacac |
32426281 |
T |
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| Q |
362 |
aggttct |
368 |
Q |
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||||||| |
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| T |
32426282 |
aggttct |
32426288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 32425966 - 32425995
Alignment:
| Q |
18 |
agttcattgttttgatggtttattcgaaag |
47 |
Q |
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| T |
32425966 |
agttcattgttttgatggtttattcgaaag |
32425995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 63 - 230
Target Start/End: Original strand, 1544180 - 1544349
Alignment:
| Q |
63 |
ggtttattcgaaagttaagtgtcatagtttattaaaacagaattgtctgatatacttcattaagtataatagtttattagtnnnnnnntatatttatctg |
162 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| |||||||||||| |||||||||||| |
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| T |
1544180 |
ggtttattcgaaagttaagtgtca--gtttattaaaacaaaattgtctgatacacttcattaagtatcgtagtttattagt-aaaaaatatatttatctg |
1544276 |
T |
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| Q |
163 |
atacacttcagttgaatagtcgtgagaaatttataatc-----atcatctttgtgatttgtctcacggaatgt |
230 |
Q |
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| T |
1544277 |
acacacttaagccgaatagtcgtgagaaattcatgatcatgatatgatctttgtgatttgtcttactgaatgt |
1544349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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