View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_low_20 (Length: 366)
Name: NF17978_low_20
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 11 - 347
Target Start/End: Complemental strand, 25540779 - 25540443
Alignment:
| Q |
11 |
catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacatacttggtttactttcaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540779 |
catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacatacttggtttactttcaa |
25540680 |
T |
|
| Q |
111 |
atgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagcaacactgtatcaagttagtagtcctt |
210 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540679 |
atgcatcgagtttcctaagaacacattcatttacctaacatgtacctttcatatacaactatgttgttagaagcaacactgtatcaagttagtagtcctt |
25540580 |
T |
|
| Q |
211 |
tagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgttcctcagtgaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540579 |
tagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgttcctcagtgaa |
25540480 |
T |
|
| Q |
311 |
attggttactgatgcgttagctgattactcatatttt |
347 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
25540479 |
attggttactgatgcgttagctgattactcatatttt |
25540443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 204 - 347
Target Start/End: Original strand, 25517048 - 25517190
Alignment:
| Q |
204 |
agtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgttcct |
303 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||| | ||||||||||| |
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| T |
25517048 |
agtcctttggctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgtttttt-taatggtaaatatgatagatggaataggtaacgttcct |
25517146 |
T |
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| Q |
304 |
cagtgaaattggttactgatgcgttagctgattactcatatttt |
347 |
Q |
| |
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|||||||||||| | ||||| ||||||||||||||||||||||| |
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| T |
25517147 |
cagtgaaattggctgctgatacgttagctgattactcatatttt |
25517190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 25534248 - 25534070
Alignment:
| Q |
11 |
catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacat------acttggtttac |
104 |
Q |
| |
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|||| ||| ||||| ||||| |||||||||| ||||| |||||||||||| ||| |||| ||||||||| ||| |||||||| ||||||||||| |
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| T |
25534248 |
catcttcaataattgccaatgttcatgactatgaatggaagagtcaattagaga-aacatagttgcatagaaaaggtacacattcagttacttggtttac |
25534150 |
T |
|
| Q |
105 |
tttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagca |
185 |
Q |
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| T |
25534149 |
tttcaaatgcatcgagattcctaagaacacattcagctactgaatatgtaccttt-atatacaaatatgttgttagaagca |
25534070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 25516165 - 25516359
Alignment:
| Q |
11 |
catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacat------acttggtttac |
104 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| |||||||||||| | | |||| |||||||||||| |||||||| ||||||||||| |
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| T |
25516165 |
catcatcagtaatttccaaacttcatgactatgaatcgaagagtcaattagaaa-aacatgtttgcatatgaaaggtacacattcagttacttggtttac |
25516263 |
T |
|
| Q |
105 |
tttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagcaacactgtatcaagtt |
200 |
Q |
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|||||||||||||||| ||||||||||||||| || ||| ||||||| |||| ||| |||||||||||| ||||||| | ||| |||||| |||| |
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| T |
25516264 |
tttcaaatgcatcgaggttcctaagaacacatccagctactgaacatgcacctgtcagatacaactatgtagttagaatctacattgtatctagtt |
25516359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 25526246 - 25526068
Alignment:
| Q |
11 |
catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacatac------ttggtttac |
104 |
Q |
| |
|
|||| ||||||||| ||||| |||||||||| ||||| |||||||||||| ||| |||| || ||||||||||| | |||||| | || |||||| |
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| T |
25526246 |
catcttcagtaattgccaatgttcatgactatgaatggaagagtcaattagaga-aacatagctgcatatgaaatgcacacattcagttagtttgtttac |
25526148 |
T |
|
| Q |
105 |
tttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagca |
185 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||| ||| ||||||| ||||||||||| ||||| |||||||||| |
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|
| T |
25526147 |
tttcaaatgcatcgagattcctaagaacacattcagctactgaatatgtacc-ttcatatacaaatatgtcgttagaagca |
25526068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 200 - 339
Target Start/End: Complemental strand, 25525049 - 25524916
Alignment:
| Q |
200 |
tagtagtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgt |
299 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| ||| | | | ||| |||||||||||||| ||||| | |
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| T |
25525049 |
tagtagtcctttggctttgacgatttgagtgctcgcaacaaatgcaactctaggagccgtttt------tttttaatatgatagatggaacaggtaacat |
25524956 |
T |
|
| Q |
300 |
tcctcagtgaaattggttactgatgcgttagctgattact |
339 |
Q |
| |
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|||||||||||||||||| ||||||||| ||||||||| |
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| T |
25524955 |
tcctcagtgaaattggttgatgatgcgttgactgattact |
25524916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 44461068 - 44461024
Alignment:
| Q |
214 |
ctttgaggattcgagtgctcgcaacaaatgcaactctaggagctg |
258 |
Q |
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||||||||||| ||||||| ||||||||||||||||||| ||||| |
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| T |
44461068 |
ctttgaggattggagtgcttgcaacaaatgcaactctagcagctg |
44461024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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