View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17978_low_21 (Length: 359)

Name: NF17978_low_21
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17978_low_21
NF17978_low_21
[»] chr7 (19 HSPs)
chr7 (15-232)||(21383612-21383830)
chr7 (219-341)||(21383857-21383980)
chr7 (15-206)||(2392867-2393068)
chr7 (14-126)||(5299104-5299217)
chr7 (15-207)||(6629432-6629623)
chr7 (17-95)||(12505695-12505775)
chr7 (26-93)||(3290785-3290852)
chr7 (24-123)||(9732834-9732934)
chr7 (26-93)||(23174981-23175049)
chr7 (28-59)||(10279839-10279870)
chr7 (26-84)||(30226084-30226143)
chr7 (26-94)||(2076495-2076563)
chr7 (26-94)||(2082914-2082982)
chr7 (26-59)||(7586631-7586664)
chr7 (17-95)||(12484265-12484345)
chr7 (26-55)||(23057235-23057264)
chr7 (26-93)||(14984662-14984729)
chr7 (26-93)||(15414273-15414340)
chr7 (26-93)||(48797719-48797786)
[»] chr4 (13 HSPs)
chr4 (17-223)||(19564694-19564902)
chr4 (19-224)||(11865208-11865422)
chr4 (21-112)||(24608677-24608769)
chr4 (15-123)||(15841593-15841701)
chr4 (26-113)||(11289439-11289526)
chr4 (17-82)||(13875975-13876040)
chr4 (26-93)||(21478098-21478165)
chr4 (26-93)||(23541234-23541301)
chr4 (26-93)||(25354737-25354804)
chr4 (26-84)||(17871604-17871663)
chr4 (55-95)||(12607270-12607310)
chr4 (17-84)||(13268845-13268913)
chr4 (26-93)||(22554960-22555027)
[»] chr6 (16 HSPs)
chr6 (15-207)||(1103400-1103600)
chr6 (99-215)||(11189437-11189554)
chr6 (14-173)||(13553259-13553421)
chr6 (15-109)||(3904756-3904850)
chr6 (17-162)||(26895521-26895666)
chr6 (15-56)||(3357086-3357127)
chr6 (15-49)||(2401295-2401329)
chr6 (24-113)||(16176564-16176654)
chr6 (26-112)||(19215925-19216010)
chr6 (15-95)||(22885226-22885307)
chr6 (15-72)||(26948198-26948254)
chr6 (26-93)||(15038338-15038405)
chr6 (26-93)||(16137683-16137750)
chr6 (32-84)||(20003136-20003188)
chr6 (26-93)||(20558292-20558359)
chr6 (15-95)||(22903184-22903265)
[»] chr1 (6 HSPs)
chr1 (15-207)||(4650302-4650495)
chr1 (17-206)||(49086683-49086874)
chr1 (130-194)||(13798525-13798589)
chr1 (19-55)||(14911972-14912008)
chr1 (26-93)||(33062376-33062443)
chr1 (26-77)||(45599430-45599481)
[»] chr2 (12 HSPs)
chr2 (15-227)||(31067575-31067788)
chr2 (15-124)||(28645755-28645865)
chr2 (90-227)||(8941154-8941291)
chr2 (15-112)||(25867143-25867241)
chr2 (15-97)||(17395542-17395625)
chr2 (25-82)||(30947335-30947393)
chr2 (17-125)||(8163065-8163174)
chr2 (26-93)||(18765666-18765733)
chr2 (15-117)||(40588714-40588815)
chr2 (15-84)||(21713441-21713511)
chr2 (26-59)||(29566036-29566069)
chr2 (17-84)||(17363516-17363584)
[»] chr3 (16 HSPs)
chr3 (27-123)||(10082375-10082472)
chr3 (15-123)||(10189288-10189397)
chr3 (15-95)||(8531380-8531461)
chr3 (21-56)||(8147636-8147671)
chr3 (17-104)||(15962252-15962339)
chr3 (130-194)||(42243669-42243733)
chr3 (26-93)||(20748265-20748331)
chr3 (26-56)||(15635974-15636004)
chr3 (26-68)||(18476945-18476987)
chr3 (17-82)||(20976081-20976147)
chr3 (26-94)||(9036697-9036765)
chr3 (26-59)||(21094802-21094835)
chr3 (26-93)||(9031482-9031549)
chr3 (26-93)||(11656012-11656079)
chr3 (15-102)||(19583999-19584087)
chr3 (15-95)||(43902124-43902204)
[»] chr5 (10 HSPs)
chr5 (16-97)||(24394618-24394700)
chr5 (15-126)||(23224866-23224977)
chr5 (26-94)||(11204711-11204779)
chr5 (26-93)||(7898016-7898083)
chr5 (26-93)||(17920885-17920952)
chr5 (26-93)||(26183336-26183403)
chr5 (26-76)||(15116799-15116850)
chr5 (26-59)||(13338616-13338649)
chr5 (27-94)||(20498256-20498323)
chr5 (15-47)||(22652402-22652434)
[»] chr8 (8 HSPs)
chr8 (17-93)||(24482308-24482385)
chr8 (130-194)||(14155818-14155882)
chr8 (15-59)||(14423725-14423769)
chr8 (26-93)||(33466261-33466328)
chr8 (15-97)||(38802344-38802427)
chr8 (26-56)||(12814693-12814723)
chr8 (26-56)||(37155627-37155657)
chr8 (26-93)||(17279879-17279946)
[»] scaffold0205 (1 HSPs)
scaffold0205 (17-84)||(9971-10039)
[»] scaffold0072 (1 HSPs)
scaffold0072 (17-97)||(18536-18616)
[»] scaffold0143 (1 HSPs)
scaffold0143 (26-93)||(36288-36355)
[»] scaffold0226 (1 HSPs)
scaffold0226 (26-56)||(7641-7671)
[»] scaffold0070 (1 HSPs)
scaffold0070 (132-194)||(3543-3605)
[»] scaffold0062 (1 HSPs)
scaffold0062 (17-97)||(2170-2251)
[»] scaffold0054 (1 HSPs)
scaffold0054 (15-95)||(8743-8824)
[»] scaffold0032 (1 HSPs)
scaffold0032 (26-93)||(103096-103163)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 21383612 - 21383830
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagccccagacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttcc 114  Q
    ||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||      
T  21383612 taatactattatagtaaatttccttcctggcttggtagtccaagacgtatgtgacgttgcaccaaactgggttatcaaataacatgtgccttttactttt 21383711  T
Q  115 tgcctttatcttagtttgttatatgtgttgtcacgatgtcttaacatcattcttgacattatgcgtgtctt-gacatcgtgatcgacatctttttcctgc 213  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||| ||||||||| ||||||||||||||||||| ||||||||    
T  21383712 tgcctttatcttaatttgttatatgtgttgtcacgatgtcttaacatcatttttaacattacgcgtgtcttagacatcgtgatcgacatctctttcctgc 21383811  T
Q  214 gtgctagaatttcacattt 232  Q
    ||||||||| |||||||||    
T  21383812 gtgctagaacttcacattt 21383830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 219 - 341
Target Start/End: Original strand, 21383857 - 21383980
Alignment:
Q  219 agaatttcacatttgaaatcaaaaatttaatcaatacttgataatgcatcttctcactagggg-aaccgaaaattggcaactaattatatgcattatgca 317  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  21383857 agaacttcacatttgaaatcacaaatttaatcaatacttgataatgcatcttctcactcgggggaaccgaaaattggcaactaattatatgcattatgca 21383956  T
Q  318 ccatttacttcaaaatgctccact 341  Q
    ||||||||||||||||||||||||    
T  21383957 ccatttacttcaaaatgctccact 21383980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 2392867 - 2393068
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagccc-cagacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttc 113  Q
    |||||||||||||||||||||| ||| | |||||||||||| || ||||| ||||||||||||| |||||||||| |||| ||| | ||| |||||||||    
T  2392867 taatactattatagtgaatttcattcttagcttggtagccctcaaacgtaggtgacgttgcaccgaactggattaacaaacaacttatgcattttacttc 2392966  T
Q  114 ctgccttta-tctta--------gtttgttatatgtgttgtcacgatgtcttaacatcattcttgacattatgcgtgtcttgacatcgtgatcgacatct 204  Q
    ||||||||| | |||        ||||||||| ||||||||||| ||||||| || || ||||||||||   || |||| |||||||||| || ||||||    
T  2392967 ctgcctttattattaaagttgttgtttgttatttgtgttgtcacaatgtcttgacttctttcttgacatctcgcttgtcatgacatcgtgttcaacatct 2393066  T
Q  205 tt 206  Q
    ||    
T  2393067 tt 2393068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 5299217 - 5299104
Alignment:
Q  14 ataatactattatagtgaatttccttcctggcttggtagcccc-agacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttactt 112  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||  || | || |||| |||||||||| ||| | |||||| |||||| |||||||    
T  5299217 ataatactattatagtggatttccttcctggcttggtagcccctagatctaggcgatgttgtaccaaactgggttaacgaataacttgtgccatttactt 5299118  T
Q  113 cctgcctttatctt 126  Q
     | || ||||||||    
T  5299117 tcagcttttatctt 5299104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 6629432 - 6629623
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagcccc-agacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttc 113  Q
    |||||||||||||||| |||||||||||| ||| ||||  || ||| |||   ||||||| ||| || ||| ||| ||||||||  ||| | |||| ||     
T  6629432 taatactattatagtggatttccttcctgtcttagtagtgcctagatgta---gacgttggaccgaattgggttaacaaataactcgtgtcatttaattt 6629528  T
Q  114 ctgcctttatctt-agtttgttatatgtgttgtcacgatgtcttaacatcattcttgacattatgcgtgtcttgacatcgtgatcgacatctttt 207  Q
    |  |||||||||| |||||||||| |||||||||||||||| || ||||  | |||||||||  |||||||||||||||||| || || ||||||    
T  6629529 caacctttatctttagtttgttatttgtgttgtcacgatgttttgacattgtacttgacattccgcgtgtcttgacatcgtgctcaacttctttt 6629623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 12505775 - 12505695
Alignment:
Q  17 atactattatagtgaatttccttcctggcttggtag--ccccagacgtatgtgacgttgcaccaaactggattatcaaata 95  Q
    |||||||||||||  ||||||||||| |||||||||  ||||||| ||| |||||||| |||| |||||| ||| ||||||    
T  12505775 atactattatagtagatttccttcctagcttggtagccccccagatgtaggtgacgttacaccgaactgggttaacaaata 12505695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 3290785 - 3290852
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| ||||||||||||||||||||| ||||||| ||  |||||||||||||||||||| ||| ||||    
T  3290785 tagtggatttccttcctggcttggtagcccccaga-gttggtgacgttgcaccaaactgggttaacaaa 3290852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 9732834 - 9732934
Alignment:
Q  24 tatagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttcctgccttta 122  Q
    ||||||||||||| ||| ||||||||||| |||||||  || ||||||||||||  |||||  ||| |||| ||| |||||||||||| | ||| |||||    
T  9732834 tatagtgaatttcgttcatggcttggtagcccccagatctaggtgacgttgcactgaactgagttaacaaacaacttgtgccttttaccttctgtcttta 9732933  T
Q  123 t 123  Q
    |    
T  9732934 t 9732934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 23174981 - 23175049
Alignment:
Q  26 tagtgaatttccttcctggcttggtagcccc-agacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| ||||||||||||||||||||||||| ||| ||| |||| |||||||| |||||| ||| ||||    
T  23174981 tagtggatttccttcctggcttggtagcccctagatgtaggtgatgttgcaccgaactgggttaacaaa 23175049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 10279870 - 10279839
Alignment:
Q  28 gtgaatttccttcctggcttggtagccccaga 59  Q
    ||||||||||||||||||||||||||||||||    
T  10279870 gtgaatttccttcctggcttggtagccccaga 10279839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 30226143 - 30226084
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactgg 84  Q
    ||||| |||||||||||| |||||||| ||||||| ||| ||||||||||||| ||||||    
T  30226143 tagtggatttccttcctgacttggtagcccccagatgtaggtgacgttgcaccgaactgg 30226084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 2076563 - 2076495
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaat 94  Q
    ||||| ||||||||| ||||||||||| ||||||| ||| ||||||||||||| |||||| ||| |||||    
T  2076563 tagtggatttccttcatggcttggtagcccccaga-gtaggtgacgttgcaccgaactgggttaacaaat 2076495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 2082982 - 2082914
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaat 94  Q
    ||||| ||||||||| ||||||||||| ||||||| ||| ||||||||||||| |||||| ||| |||||    
T  2082982 tagtggatttccttcatggcttggtagcccccaga-gtaggtgacgttgcaccgaactgggttaacaaat 2082914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 7586631 - 7586664
Alignment:
Q  26 tagtgaatttccttcctggcttggtagccccaga 59  Q
    ||||| ||||||||||||||||||||||||||||    
T  7586631 tagtggatttccttcctggcttggtagccccaga 7586664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 12484345 - 12484265
Alignment:
Q  17 atactattatagtgaatttccttcctggcttggtag--ccccagacgtatgtgacgttgcaccaaactggattatcaaata 95  Q
    |||||||||||||  ||||||||||| |||||||||  ||||||| ||| |||||||| |||| |||| | ||| ||||||    
T  12484345 atactattatagtagatttccttcctagcttggtagccccccagatgtaggtgacgttacaccgaacttggttaacaaata 12484265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 23057264 - 23057235
Alignment:
Q  26 tagtgaatttccttcctggcttggtagccc 55  Q
    ||||||||||||||||||||||||||||||    
T  23057264 tagtgaatttccttcctggcttggtagccc 23057235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 14984729 - 14984662
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| ||||||||||||||||| ||| ||||||| ||| ||||||||||||| |||||| ||| ||||    
T  14984729 tagtggatttccttcctggcttgatagcccccaga-gtaggtgacgttgcaccgaactgggttaacaaa 14984662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 15414340 - 15414273
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| ||||||||||||||||| ||| ||||||| ||| ||||||||||||| |||||| ||| ||||    
T  15414340 tagtggatttccttcctggcttgatagcccccaga-gtaggtgacgttgcaccgaactgggttaacaaa 15414273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 48797719 - 48797786
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||  |||||| ||| ||||    
T  48797719 tagtggatttccttcctggcttggtagcccccaga-gtaggtgacgttgcactgaactgggttaacaaa 48797786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 19564902 - 19564694
Alignment:
Q  17 atactattatagtgaatttccttcctggcttggtagcccc-agacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttcct 115  Q
    |||||||||||||| ||||||||| |||||||||| || | |||| ||  ||||||||||||||||||| ||| ||||||||  ||||||||||||| ||    
T  19564902 atactattatagtggatttccttcttggcttggtaacctctagacttagatgacgttgcaccaaactgggttaacaaataacccgtgccttttactttct 19564803  T
Q  116 gcctttatctt-agtttgttatatgtgttgtcacgatgtcttaacatcattcttgacattatgcgtgtcttgacatcgtgatcgacatctttttcctgcg 214  Q
    ||||||||||| |  ||||||| ||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| || | |||| |||||| ||    
T  19564802 gcctttatctttaagttgttatttgtgttgtctcgatgtcttgacatcattcttgacattacgcgtgtcttgacatcgtgctcaaaatctctttcctacg 19564703  T
Q  215 tgctagaat 223  Q
    ||| |||||    
T  19564702 tgccagaat 19564694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 11865208 - 11865422
Alignment:
Q  19 actattatagtgaatttccttcctggcttggtagcccc-agacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttcctgc 117  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||   ||||||||||| |||||| ||| |||||||| ||||||||||||||  |||    
T  11865208 actattatagtgaattttcttcctggcttggtagcccccagacgtagaagacgttgcaccgaactgggttaacaaataacttgtgccttttactttttgc 11865307  T
Q  118 ctttatctt--ag------tttgtta-tatgtgttgtcacgatgtcttaacatcattcttgacattatgcgtgtcttgacatcgtgatcgacatcttttt 208  Q
    |||||||||  ||      ||||||| | ||||||||||||||||||| ||||| | ||||||||| ||||||||||||||| |||  | ||||| ||||    
T  11865308 ctttatctttaagttgttatttgttattttgtgttgtcacgatgtcttgacatcttacttgacattctgcgtgtcttgacattgtgcccaacatc-tttt 11865406  T
Q  209 cctgcgtgctagaatt 224  Q
     ||| |||||||||||    
T  11865407 actgtgtgctagaatt 11865422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 24608769 - 24608677
Alignment:
Q  21 tattatagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttactt 112  Q
    ||||||||||||||||||| |  ||||||||| ||||||||||| ||||||||||||| |||||| ||| |||||||| ||||||||||||||    
T  24608769 tattatagtgaatttcctttcaagcttggtagtccccagacgtaggtgacgttgcaccgaactgggttaacaaataacttgtgccttttactt 24608677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 15841701 - 15841593
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagccccagacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttcc 114  Q
    ||||| ||||||||||||||||||||||| |||  | | |||||||||| ||||| ||||||  |||||| ||| ||||| || |||| |||||||||||    
T  15841701 taatattattatagtgaatttccttcctgacttatttgacccagacgtaggtgacattgcactgaactgggttaacaaattacttgtgtcttttacttcc 15841602  T
Q  115 tgcctttat 123  Q
    |||||||||    
T  15841601 tgcctttat 15841593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 11289439 - 11289526
Alignment:
Q  26 tagtgaatttccttcctggcttggtagccccagacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttc 113  Q
    |||||||||| |||||||||||| || ||||||||||  ||||||||||||| |||||| ||| |||| | |||||||||||||||||    
T  11289439 tagtgaattttcttcctggcttgttaaccccagacgttggtgacgttgcaccgaactgggttaacaaacaccatgtgccttttacttc 11289526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 13876040 - 13875975
Alignment:
Q  17 atactattatagtgaatttccttcctggcttggtagccccagacgtatgtgacgttgcaccaaact 82  Q
    |||||| |||||||||||||||||||||||||||||||||| | ||| || | |||||||||||||    
T  13876040 atactactatagtgaatttccttcctggcttggtagccccatatgtaggttaagttgcaccaaact 13875975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 21478165 - 21478098
Alignment:
Q  26 tagtgaatttccttcctggcttggtagcc-ccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||| ||| ||||    
T  21478165 tagtgtatttccttcctggcttggtagcctccaga-gtaggtgacgttgcaccgaactgggttaacaaa 21478098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 23541301 - 23541234
Alignment:
Q  26 tagtgaatttccttcctggcttggtagcc-ccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||| ||| ||||    
T  23541301 tagtggatttccttcctggcttggtagcctccaga-gtaggtgacgttgcaccgaactgggttaacaaa 23541234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 25354737 - 25354804
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||| |||||| ||| ||||    
T  25354737 tagtggatttccttcctggcttggtagcccccaga-gtaggtgacgttgcaccgaactgggttaacaaa 25354804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 17871604 - 17871663
Alignment:
Q  26 tagtgaatttccttcctggcttggtagccc-cagacgtatgtgacgttgcaccaaactgg 84  Q
    |||||||||||||||||| ||||||||||| |||| ||| |||| |||||||| ||||||    
T  17871604 tagtgaatttccttcctgacttggtagccctcagatgtaggtgaagttgcaccgaactgg 17871663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 12607310 - 12607270
Alignment:
Q  55 ccagacgtatgtgacgttgcaccaaactggattatcaaata 95  Q
    ||||| ||| ||||||||||||| |||||||||||||||||    
T  12607310 ccagatgtaggtgacgttgcaccgaactggattatcaaata 12607270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 13268913 - 13268845
Alignment:
Q  17 atactattatagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactgg 84  Q
    |||||| | ||||| |||||||||||| |||||||| ||||||| ||| |||| |||||||| ||||||    
T  13268913 atactactgtagtggatttccttcctgacttggtagcccccagatgtaggtgaagttgcaccgaactgg 13268845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 22555027 - 22554960
Alignment:
Q  26 tagtgaatttccttcctggcttggtagcc-ccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| |||||||||||||||||||||||  |||| ||| ||||||||||||| |||||| ||| ||||    
T  22555027 tagtggatttccttcctggcttggtagccttcaga-gtaggtgacgttgcaccgaactgggttaacaaa 22554960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 1103400 - 1103600
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagccccagacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttcc 114  Q
    |||||||||||||||  ||||| |||||||||||||||||||||||||| ||| ||||||||| |||||| |||  ||||||| |||||||||||||| |    
T  1103400 taatactattatagtagatttctttcctggcttggtagccccagacgtaagtggcgttgcaccgaactgggttaaaaaataacttgtgccttttactttc 1103499  T
Q  115 tgcctttatc-----ttag---tttgttatatgtgttgtcacgatgtcttaacatcattcttgacattatgcgtgtcttgacatcgtgatcgacatcttt 206  Q
     || ||||||     ||||   |||||||| ||||||||||||||||||| ||||  | || |||||| ||||||||||||||||||| |  ||||||||    
T  1103500 agcttttatctactattagttatttgttatttgtgttgtcacgatgtcttgacattgtgctcgacattgtgcgtgtcttgacatcgtgcttaacatcttt 1103599  T
Q  207 t 207  Q
    |    
T  1103600 t 1103600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 11189437 - 11189554
Alignment:
Q  99 tgtgccttttacttcctgcctttatctt-agtttgttatatgtgttgtcacgatgtcttaacatcattcttgacattatgcgtgtcttgacatcgtgatc 197  Q
    |||| ||||||||| ||| ||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||    ||||||||||||||| |     
T  11189437 tgtgtcttttactttctgtctttatctttagtttgttatgtgtgttgtcacgatgtctcgacatcattcttgacattacaaatgtcttgacatcgtgtta 11189536  T
Q  198 gacatctttttcctgcgt 215  Q
    ||||||| |||| |||||    
T  11189537 gacatctctttcttgcgt 11189554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 13553421 - 13553259
Alignment:
Q  14 ataatactattatagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttactt 112  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||| |||||||| ||||||  || ||||||||  ||||||||||| |    
T  13553421 ataatactattatagtgaatttccttcctggcatggtagcccccaaacgtaggtgatgttgcacccaactgggatagcaaataactcgtgccttttacct 13553322  T
Q  113 cctgcctttatct--tagtttgttatatgtgttgtcacgatgtcttaacatcattcttgacat 173  Q
     ||| ||||| ||  |  |||| ||| ||||||||||| |||| || ||||| | ||||||||    
T  13553321 tctgtctttaacttgttatttgatatttgtgttgtcacaatgttttgacatcttacttgacat 13553259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 3904756 - 3904850
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagccccagacgtatgtgacgttgcaccaaactggattatcaaataacatgtgcctttta 109  Q
    |||||||||||||||  |||||||||||||||||||||||||| ||||| | |||||| |||| |||| | ||| |||||| | |||||||||||    
T  3904756 taatactattatagttgatttccttcctggcttggtagccccaaacgtaggggacgtttcaccgaactaggttaacaaatatcttgtgcctttta 3904850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 26895666 - 26895521
Alignment:
Q  17 atactattatagtgaatttccttcctggcttggtagccccagacgtatgtgacgttgcaccaaactggattatcaaataacatgtg-ccttttacttcct 115  Q
    |||||| ||| |||||||||||| ||||||||||| ||||||| ||| |||| ||||||||||||||  ||| |||| | | |||| ||||||  |||||    
T  26895666 atactactattgtgaatttcctttctggcttggtaaccccagatgtaggtgaagttgcaccaaactgagttaacaaacaccttgtgtccttttttttcct 26895567  T
Q  116 gcctttatcttagtttgttatatgtgttgtcacgatgtcttaacatc 162  Q
    |||||| | || ||||||||  |||||| |||||| ||||| |||||    
T  26895566 gcctttttatt-gtttgttaattgtgttatcacgaggtcttgacatc 26895521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 3357086 - 3357127
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagcccc 56  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  3357086 taatactattatagtgaatttccttcttggcttggtagcccc 3357127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 2401329 - 2401295
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttgg 49  Q
    |||||||||||||||||||||||||||||||||||    
T  2401329 taatactattatagtgaatttccttcctggcttgg 2401295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 16176654 - 16176564
Alignment:
Q  24 tatagtgaatttccttcctggcttggtagcc-ccagacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttc 113  Q
    ||||||||| |||||||||||||||||||||  |||||||| |||| || |||| ||||||| ||| |||| | | |||| ||||||||||    
T  16176654 tatagtgaaattccttcctggcttggtagcctgcagacgtaggtgaagtcgcactaaactgggttaacaaacaccttgtgtcttttacttc 16176564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 19216010 - 19215925
Alignment:
Q  26 tagtgaatttccttcctggcttggtagccccagacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttactt 112  Q
    ||||| |||||||||||||||||||| ||| ||| ||| ||||||||||||| |||||| ||| ||||    |||||||||||||||    
T  19216010 tagtggatttccttcctggcttggtatccctaga-gtaggtgacgttgcaccgaactgggttaacaaactcaatgtgccttttactt 19215925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 22885226 - 22885307
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttgg-tagccccagacgtatgtgacgttgcaccaaactggattatcaaata 95  Q
    |||||||||||||||  |||||||||||||||||| |  ||||||| ||| |||||||||||||  ||||| ||| ||||||    
T  22885226 taatactattatagtagatttccttcctggcttggatgcccccagatgtaggtgacgttgcaccgtactgggttaacaaata 22885307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 26948198 - 26948254
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagccccagacgtatgtgacgtt 72  Q
    ||||||||||||| ||||||||||||||||||||| ||||| ||| ||| ||||||||    
T  26948198 taatactattatattgaatttccttcctggcttgg-agcccgagatgtaagtgacgtt 26948254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 15038405 - 15038338
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| |||||||||||| |||||||| ||||||| ||| |||||||||||||||||||| ||| ||||    
T  15038405 tagtggatttccttcctgacttggtagcccccaga-gtaggtgacgttgcaccaaactgggttaacaaa 15038338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 16137683 - 16137750
Alignment:
Q  26 tagtgaatttccttcctggcttggtagccc-cagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| |||||||||||||||||||||||| |||| ||| ||||||||||| |||||||| ||| ||||    
T  16137683 tagtggatttccttcctggcttggtagccctcaga-gtaggtgacgttgcatcaaactgggttaacaaa 16137750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 20003188 - 20003136
Alignment:
Q  32 atttccttcctggcttggtagccccagacgtatgtgacgttgcaccaaactgg 84  Q
    |||||||||||||||||||||||||  | ||| ||||||||||||| ||||||    
T  20003188 atttccttcctggcttggtagcccctaaagtaggtgacgttgcaccgaactgg 20003136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 20558359 - 20558292
Alignment:
Q  26 tagtgaatttccttcctggcttggtagcc-ccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| ||||||||||||||||||||||| |||||| || ||||||||||||| |||||| ||| ||||    
T  20558359 tagtggatttccttcctggcttggtagcctccagac-taggtgacgttgcaccgaactgggttaacaaa 20558292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 22903184 - 22903265
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttgg-tagccccagacgtatgtgacgttgcaccaaactggattatcaaata 95  Q
    |||||||||||||||  |||| ||||||||||||| |  ||||||| ||| |||||||||||||  ||||| ||| ||||||    
T  22903184 taatactattatagtagattttcttcctggcttggatgtccccagatgtaggtgacgttgcaccgcactgggttaacaaata 22903265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 4650302 - 4650495
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagcccc-agacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttc 113  Q
    |||||||||||||||| |||||||||||| ||||| |||||| | | ||| ||||||||||||  |||| ||||| |||||||| |||| | |||||||     
T  4650302 taatactattatagtggatttccttcctgacttgg-agcccctaaatgtaggtgacgttgcacataactagattaacaaataacttgtgtcatttacttt 4650400  T
Q  114 ctgcctttatctt-agtttgttatatgtgttgtcacgatgtcttaacatcattcttgacattatgcgtgtcttgacatcgtgatcgacatctttt 207  Q
      ||||||||||| |||||| ||| ||||||||||||||||||| ||||  | || ||||||  |||||||||||||||||| || |||||||||    
T  4650401 tagcctttatctttagtttgctatttgtgttgtcacgatgtcttgacattgtactcgacatttcgcgtgtcttgacatcgtgctcaacatctttt 4650495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 49086683 - 49086874
Alignment:
Q  17 atactattatagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttcct 115  Q
    |||||| ||||||||||||| ||||||||||||||| ||||| | ||| ||||||||||||| |||||| ||| ||||  || |||| ||||||||| ||    
T  49086683 atactactatagtgaatttctttcctggcttggtagcccccacatgtaggtgacgttgcaccgaactgggttaacaaacgacttgtgtcttttactttct 49086782  T
Q  116 gccttta-tcttagtttgttatatgtgttgtcacgatgtcttaacatcattcttgacattatgcgtgtcttgacatcgtgatcgacatcttt 206  Q
    | ||||| | |||  ||||||| | ||||| ||||||||||| ||||| |||| ||||||  || |||| | |||||||| || ||||||||    
T  49086783 gtctttattattaagttgttatttctgttgacacgatgtcttgacatctttctagacatttcgcttgtcgttacatcgtgctcaacatcttt 49086874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 13798589 - 13798525
Alignment:
Q  130 ttgttatatgtgttgtcacgatgtcttaacatcattcttgacattatgcgtgtcttgacatcgtg 194  Q
    ||||||| |||||| |||||||||||| ||||| |||||||||| |  | |||||||||||||||    
T  13798589 ttgttatttgtgttatcacgatgtcttgacatctttcttgacatcacacttgtcttgacatcgtg 13798525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 14911972 - 14912008
Alignment:
Q  19 actattatagtgaatttccttcctggcttggtagccc 55  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  14911972 actattatagtggatttccttcatggcttggtagccc 14912008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 33062443 - 33062376
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| |||||||| |||||||||||| ||||||| ||| ||||||||||||| |||||| ||| ||||    
T  33062443 tagtggatttcctttctggcttggtagcccccaga-gtaggtgacgttgcaccgaactgggttaacaaa 33062376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 45599430 - 45599481
Alignment:
Q  26 tagtgaatttccttcctggcttggtagcccc-agacgtatgtgacgttgcacc 77  Q
    ||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||    
T  45599430 tagtggatttccttcctggcttggtagccccgaga-gtaggtgacgttgcacc 45599481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 31067575 - 31067788
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagcccc-agacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttc 113  Q
    |||||||||||||||| ||||||||||||  ||||||||||| ||||||| |||||||||||||||||| | ||| |||||||| |||| | |||||||     
T  31067575 taatactattatagtggatttccttcctgaattggtagcccccagacgtaggtgacgttgcaccaaactaggttaacaaataacttgtgtcatttacttt 31067674  T
Q  114 ctgcctttatctt-agtttgttatatgtgttgtcacgatgtcttaacatcattcttgacattatgcgtgtcttgacatcgtgatcgacatctttttcctg 212  Q
     ||| |||| ||| || ||||||| | |||||||||||||| || ||||  |  | || |||    |||||||||||||||| || ||||| |||| |||    
T  31067675 ttgcatttaccttaagattgttatttatgttgtcacgatgttttgacattgtattcgatattcctagtgtcttgacatcgtgttcaacatc-ttttactg 31067773  T
Q  213 cgtgctagaatttca 227  Q
    ||||| |||||||||    
T  31067774 cgtgccagaatttca 31067788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 28645755 - 28645865
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagccccag-acgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttc 113  Q
    ||||||||||||||||| ||||||||||| ||||||| |||| | | ||| ||||||||||||  |||| | |||  ||||||||||||||||||||||     
T  28645755 taatactattatagtgattttccttcctgacttggtatcccccggatgtaggtgacgttgcacagaacttggttaataaataacatgtgccttttacttt 28645854  T
Q  114 ctgcctttatc 124  Q
    |||||||||||    
T  28645855 ctgcctttatc 28645865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 227
Target Start/End: Complemental strand, 8941291 - 8941154
Alignment:
Q  90 caaataacatgtgccttttacttcctgcctttatctt-agtttgttatatgtgttgtcacgatgtcttaacatcattcttgacattatgcgtgtcttgac 188  Q
    |||||||| |||||  ||||||| | || |||||||| |||||||||| ||| ||||||| ||||||| ||||  | || ||||||   |||||||||||    
T  8941291 caaataacttgtgcaatttactttcagcttttatctttagtttgttatttgtattgtcacaatgtcttgacattgtactcgacattcctcgtgtcttgac 8941192  T
Q  189 atcgtgatcgacatctttttcctgcgtgctagaatttca 227  Q
    |||||| ||  |||| |||| ||||||||||||||||||    
T  8941191 atcgtgctcagcatc-ttttactgcgtgctagaatttca 8941154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 25867241 - 25867143
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagcc-ccagacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttactt 112  Q
    ||||||||| ||| || |||||||||||||| |||||||| ||||| ||| ||||||||||||||||||   |||  ||||||| |||| |||||||||    
T  25867241 taatactatcatactggatttccttcctggcctggtagcctccagatgtaggtgacgttgcaccaaactaagttaagaaataacttgtgtcttttactt 25867143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 17395625 - 17395542
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaataac 97  Q
    |||||||||||||||| ||||||||||||||||| ||| ||||| || || | ||||||||||| |||||| | | ||||||||    
T  17395625 taatactattatagtggatttccttcctggcttgatagcccccacacttaggcgacgttgcaccgaactgggtaaacaaataac 17395542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 30947393 - 30947335
Alignment:
Q  25 atagtgaatttccttcctggcttggtagcccc-agacgtatgtgacgttgcaccaaact 82  Q
    ||||||||||||||||||| |||||||||||| ||| ||| |||| |||||||||||||    
T  30947393 atagtgaatttccttcctgacttggtagcccctagatgtaggtgaagttgcaccaaact 30947335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 8163065 - 8163174
Alignment:
Q  17 atactattatagtgaatttccttcctggcttggtagcccc-agacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttcct 115  Q
    ||||| |||||||| |||| ||||||| |||||||||||| ||||||| ||||| ||||| | |||||  ||| |||||||| |||| || |||||| |     
T  8163065 atactgttatagtggattttcttcctgacttggtagccccaagacgtacgtgacattgcatcgaactgtgttaacaaataacttgtgtctcttactttca 8163164  T
Q  116 gcctttatct 125  Q
    || |||||||    
T  8163165 gcttttatct 8163174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 18765733 - 18765666
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||| |||||| ||| ||||    
T  18765733 tagtggatttccttcctggcttggtagcccccaga-gtaggtgacgttgcaccgaactgggttaacaaa 18765666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 40588714 - 40588815
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttgg-tagccccagacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttc 113  Q
    |||||| ||||||||||||||  ||||| |||||| || ||||||| ||| ||||||||||| | |||||||||| |||||| | ||||   ||||||||    
T  40588714 taataccattatagtgaattt--ttcctagcttggatacccccagatgtaggtgacgttgcatcgaactggattaacaaataccctgtgttatttacttc 40588811  T
Q  114 ctgc 117  Q
    ||||    
T  40588812 ctgc 40588815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 21713441 - 21713511
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagcccc-agacgtatgtgacgttgcaccaaactgg 84  Q
    |||||||||||||||| ||||||||||||| ||||  ||||| | | ||| |||| |||||||||||||||    
T  21713441 taatactattatagtggatttccttcctggtttggatgcccctacatgtaggtgatgttgcaccaaactgg 21713511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 29566069 - 29566036
Alignment:
Q  26 tagtgaatttccttcctggcttggtagccccaga 59  Q
    ||||| ||||||||||||||||||||||||||||    
T  29566069 tagtggatttccttcctggcttggtagccccaga 29566036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 17363584 - 17363516
Alignment:
Q  17 atactattatagtgaatttccttcctggcttggt-agccccagacgtatgtgacgttgcaccaaactgg 84  Q
    ||||||| |||||||||||| |||||| |||||| | ||||||| ||| |||| |||||||| ||||||    
T  17363584 atactatcatagtgaatttcattcctgacttggtaacccccagatgtaggtgaggttgcaccgaactgg 17363516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 10082375 - 10082472
Alignment:
Q  27 agtgaatttccttcctggcttggtagcccc-agacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttcctgcctttat 123  Q
    |||||||||||||||| ||||||||||||| ||| ||| ||||||||||||| |||||| ||| |||| ||| ||||| ||||||||||||| |||||    
T  10082375 agtgaatttccttcctagcttggtagcccctagatgtaggtgacgttgcaccgaactgggttaacaaacaacttgtgcattttacttcctgcttttat 10082472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 10189288 - 10189397
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagcccc-agacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttc 113  Q
    ||||| ||| |||||||||||||||||| ||||||||||||| | | ||| ||||||||||||| |||||| ||| |||| ||| ||||| |||||||||    
T  10189288 taatattatcatagtgaatttccttcctagcttggtagcccctacatgtaggtgacgttgcaccgaactgggttaacaaacaacttgtgcattttacttc 10189387  T
Q  114 ctgcctttat 123  Q
    |||| |||||    
T  10189388 ctgcttttat 10189397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 8531461 - 8531380
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagcc-ccagacgtatgtgacgttgcaccaaactggattatcaaata 95  Q
    |||||||||||||||| |||||||| |||||||||  ||| ||||| ||| ||||||||||||| |||||| ||| ||||||    
T  8531461 taatactattatagtggatttcctttctggcttggatgccaccagaggtaggtgacgttgcaccgaactgggttaacaaata 8531380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 8147636 - 8147671
Alignment:
Q  21 tattatagtgaatttccttcctggcttggtagcccc 56  Q
    ||||||||||||||||||||||||||||||||||||    
T  8147636 tattatagtgaatttccttcctggcttggtagcccc 8147671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 15962339 - 15962252
Alignment:
Q  17 atactattatagtgaatttccttcctggcttggtagccccagacgtatgtgacgttgcaccaaactggattatcaaataacatgtgcc 104  Q
    |||||| ||||||||||||||||||| |||||||||||  ||| ||| ||||| ||||||| || ||| ||| |||| ||| ||||||    
T  15962339 atactactatagtgaatttccttcctagcttggtagccttagatgtaggtgacattgcaccgaagtgggttaacaaacaacttgtgcc 15962252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 42243733 - 42243669
Alignment:
Q  130 ttgttatatgtgttgtcacgatgtcttaacatcattcttgacattatgcgtgtcttgacatcgtg 194  Q
    ||||||| |||||| |||||||||||| ||||| |||||||||| |  | |||||||||||||||    
T  42243733 ttgttatttgtgttatcacgatgtcttgacatctttcttgacatcacacttgtcttgacatcgtg 42243669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 20748265 - 20748331
Alignment:
Q  26 tagtgaatttccttcctggcttggtagccccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| |||||||||||||||||||||||||| | ||| |||| |||||||| |||||| ||| ||||    
T  20748265 tagtggatttccttcctggcttggtagcccca-aagtaggtgatgttgcaccgaactgggttaacaaa 20748331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 56
Target Start/End: Original strand, 15635974 - 15636004
Alignment:
Q  26 tagtgaatttccttcctggcttggtagcccc 56  Q
    |||||||||||||||||||||||||||||||    
T  15635974 tagtgaatttccttcctggcttggtagcccc 15636004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 18476987 - 18476945
Alignment:
Q  26 tagtgaatttccttcctggcttggtagccccagacgtatgtga 68  Q
    ||||| |||||||||||||||||||||||||||| ||| ||||    
T  18476987 tagtggatttccttcctggcttggtagccccagatgtaggtga 18476945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 20976081 - 20976147
Alignment:
Q  17 atactattatagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaact 82  Q
    |||||||| ||||| ||||||||||||| ||||||| ||||||| ||| |||| |||||||| ||||    
T  20976081 atactattgtagtggatttccttcctggtttggtagcccccagatgtaggtgaagttgcaccgaact 20976147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 9036765 - 9036697
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaat 94  Q
    ||||| ||||||||||||| ||||||| ||||||| |||||||| |||||||| |||||| ||| |||||    
T  9036765 tagtggatttccttcctggtttggtagcccccaga-gtatgtgatgttgcaccgaactgggttaacaaat 9036697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 21094802 - 21094835
Alignment:
Q  26 tagtgaatttccttcctggcttggtagccccaga 59  Q
    |||||||||||||||||| |||||||||||||||    
T  21094802 tagtgaatttccttcctgacttggtagccccaga 21094835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 9031482 - 9031549
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| |||||||||||| |||||||| ||||||| ||| ||||||||||||| |||||| ||| ||||    
T  9031482 tagtggatttccttcctgacttggtagcccccaga-gtaggtgacgttgcaccgaactgggttaacaaa 9031549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 11656079 - 11656012
Alignment:
Q  26 tagtgaatttccttcctggcttggtagcc-ccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||||||||| |||||| |||||||||| ||||| ||| ||||| |||||||||||||| ||| ||||    
T  11656079 tagtgaatttctttcctgacttggtagcctccaga-gtaggtgacattgcaccaaactgggttaacaaa 11656012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 19583999 - 19584087
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttgg-tagccccagacgtatgtgacgttgcaccaaactggattatcaaataacatgtg 102  Q
    |||||||||||||||| |||| ||||||||||||| |  ||| ||| ||| ||||| ||||||  |||||| ||| |||||| ||||||    
T  19583999 taatactattatagtggattttcttcctggcttggattcccctagatgtaggtgacattgcactgaactgggttaacaaatatcatgtg 19584087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 43902124 - 43902204
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagccccagacgtatgtgacgttgcaccaaactggattatcaaata 95  Q
    ||||||| |||||||  ||||| ||||||||||||   ||||| | ||| ||||||||||||| || ||||||| ||||||    
T  43902124 taatactgttatagtagatttctttcctggcttggagcccccaaatgtaggtgacgttgcaccgaattggattaacaaata 43902204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 24394700 - 24394618
Alignment:
Q  16 aatactattatagtgaatttccttcctggcttgg-tagccccagacgtatgtgacgttgcaccaaactggattatcaaataac 97  Q
    ||||||||||||||| |||||||||||||||||| |  ||||||| ||| ||||||||||||| || ||| ||| ||||||||    
T  24394700 aatactattatagtggatttccttcctggcttggatgcccccagatgtaggtgacgttgcaccgaaatgggttaacaaataac 24394618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 23224977 - 23224866
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagccccagacgtatgtgacgttgcaccaaactggattatcaaataacatgtgccttttacttcc 114  Q
    ||||||||||||| || |||| ||||||| |||||||||| | || ||| ||||| ||||||  |||||| ||| |||||||| |||| | ||||||| |    
T  23224977 taatactattataatggattttcttcctgacttggtagcctcggatgtaagtgacattgcactgaactgggttaacaaataacttgtgtcatttactttc 23224878  T
Q  115 tgcctttatctt 126  Q
     || ||||||||    
T  23224877 agcttttatctt 23224866  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 11204779 - 11204711
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaat 94  Q
    ||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||| |||||| ||| |||||    
T  11204779 tagtggatttccttcctggcttggtagcccccaga-gtaggtgacgttgcaccgaactgggttaacaaat 11204711  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 7898016 - 7898083
Alignment:
Q  26 tagtgaatttccttcctggcttggtagcc-ccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||| ||| ||||    
T  7898016 tagtggatttccttcctggcttggtagcctccaga-gtaggtgacgttgcaccgaactgggttaacaaa 7898083  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 17920885 - 17920952
Alignment:
Q  26 tagtgaatttccttcctggcttggtagcccc-agacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||| ||| ||||    
T  17920885 tagtggatttccttcctggcttggtagcccctaga-gtaggtgacgttgcaccgaactgggttaacaaa 17920952  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 26183336 - 26183403
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||| |||||| ||| ||||    
T  26183336 tagtgtatttccttcctggcttggtagcccccaga-gtaggtgacgttgcaccgaactgggttaacaaa 26183403  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 15116850 - 15116799
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcac 76  Q
    |||||||||||||||||| |||||||| ||||||||||| |||| |||||||    
T  15116850 tagtgaatttccttcctgacttggtagcccccagacgtaggtgaggttgcac 15116799  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 13338649 - 13338616
Alignment:
Q  26 tagtgaatttccttcctggcttggtagccccaga 59  Q
    ||||| ||||||||||||||||||||||||||||    
T  13338649 tagtggatttccttcctggcttggtagccccaga 13338616  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 20498256 - 20498323
Alignment:
Q  27 agtgaatttccttcctggcttggtagcc-ccagacgtatgtgacgttgcaccaaactggattatcaaat 94  Q
    |||| |||||||||||| |||||||||| ||||| ||| ||||||||||||| |||||| ||| |||||    
T  20498256 agtggatttccttcctgacttggtagcctccaga-gtaggtgacgttgcaccgaactgggttaacaaat 20498323  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 22652402 - 22652434
Alignment:
Q  15 taatactattatagtgaatttccttcctggctt 47  Q
    ||||| |||||||||||||||||||||||||||    
T  22652402 taataatattatagtgaatttccttcctggctt 22652434  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 24482385 - 24482308
Alignment:
Q  17 atactattatagtgaatttccttcctggcttggtagcccc-agacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    |||||| ||||||||||||||||| || |||| ||||||| ||| ||| |||||||||||||||||||| ||| ||||    
T  24482385 atactactatagtgaatttccttcttgacttgttagcccccagatgtaggtgacgttgcaccaaactgggttaacaaa 24482308  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 14155882 - 14155818
Alignment:
Q  130 ttgttatatgtgttgtcacgatgtcttaacatcattcttgacattatgcgtgtcttgacatcgtg 194  Q
    ||||||| |||||| |||||||||||| ||||| |||||||||| |  | |||||||||||||||    
T  14155882 ttgttatttgtgttatcacgatgtcttgacatctttcttgacatcacacttgtcttgacatcgtg 14155818  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 14423769 - 14423725
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttggtagccccaga 59  Q
    |||||||||||||||| ||||||||||||||||||  ||||||||    
T  14423769 taatactattatagtggatttccttcctggcttggatgccccaga 14423725  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 33466261 - 33466328
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| |||| |||||||||||||||| ||||||| ||| ||||||||||||| |||||||||| ||||    
T  33466261 tagtggattttcttcctggcttggtagcccccaga-gtaggtgacgttgcaccgaactggattaacaaa 33466328  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 38802344 - 38802427
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttgg-tagccccagacgtatgtgacgttgcaccaaactggattatcaaataac 97  Q
    |||||||||||||||| |||||||||| | ||||| |  ||||||| ||| |||| |||| |||||||||||||  ||||||||    
T  38802344 taatactattatagtggatttccttccagacttggatgcccccagatgtaggtgatgttgtaccaaactggatttacaaataac 38802427  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 56
Target Start/End: Original strand, 12814693 - 12814723
Alignment:
Q  26 tagtgaatttccttcctggcttggtagcccc 56  Q
    |||||||||||||||||||||||||||||||    
T  12814693 tagtgaatttccttcctggcttggtagcccc 12814723  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 56
Target Start/End: Original strand, 37155627 - 37155657
Alignment:
Q  26 tagtgaatttccttcctggcttggtagcccc 56  Q
    |||||||||||||||||||||||||||||||    
T  37155627 tagtgaatttccttcctggcttggtagcccc 37155657  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 17279946 - 17279879
Alignment:
Q  26 tagtgaatttccttcctggcttggta-gccccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| ||||||||||||||||||||  ||||||| ||| ||||||||||||| |||||| ||| ||||    
T  17279946 tagtggatttccttcctggcttggtatcccccaga-gtaggtgacgttgcaccgaactgggttaacaaa 17279879  T

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Target: scaffold0205 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 10039 - 9971
Alignment:
Q  17 atactattatagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactgg 84  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||| || | |||||||| ||||||    
T  10039 atactattatagtgaatttccttcctggctttgtagcccccagatgtaggttaggttgcaccgaactgg 9971  T

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Target: scaffold0072 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 18616 - 18536
Alignment:
Q  17 atactattatagtgaatttccttcctggcttggtagccccagacgtatgtgacgttgcaccaaactggattatcaaataac 97  Q
    |||||| ||||||| ||||||||| |||||||||||||||| | ||| |||| |||||||| |||||| | | ||||||||    
T  18616 atactactatagtggatttccttcatggcttggtagccccaaaagtaggtgaagttgcaccgaactgggtcaacaaataac 18536  T

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Target: scaffold0143 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 36355 - 36288
Alignment:
Q  26 tagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| |||| |||||||||||||||| ||||||| ||| ||||||||||||| |||||||||| ||||    
T  36355 tagtggattttcttcctggcttggtagcccccaga-gtaggtgacgttgcaccgaactggattaacaaa 36288  T

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Target: scaffold0226 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 56
Target Start/End: Original strand, 7641 - 7671
Alignment:
Q  26 tagtgaatttccttcctggcttggtagcccc 56  Q
    |||||||||||||||||||||||||||||||    
T  7641 tagtgaatttccttcctggcttggtagcccc 7671  T

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Target: scaffold0070 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 3605 - 3543
Alignment:
Q  132 gttatatgtgttgtcacgatgtcttaacatcattcttgacattatgcgtgtcttgacatcgtg 194  Q
    ||||| ||||||||||||||||||| ||||  | || ||||||  ||||||||||||||||||    
T  3605 gttatttgtgttgtcacgatgtcttgacattgtgctggacattccgcgtgtcttgacatcgtg 3543  T

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Target: scaffold0062 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 2170 - 2251
Alignment:
Q  17 atactattatagtgaatttccttcctggcttggtag-ccccagacgtatgtgacgttgcaccaaactggattatcaaataac 97  Q
    |||||| |||| || ||||| ||||||||||||||| ||||||| ||| |||| |||||||| |||||| | | ||||||||    
T  2170 atactagtataatggatttctttcctggcttggtagcccccagatgtaggtgaagttgcaccgaactgggtgaacaaataac 2251  T

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Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 8743 - 8824
Alignment:
Q  15 taatactattatagtgaatttccttcctggcttgg-tagccccagacgtatgtgacgttgcaccaaactggattatcaaata 95  Q
    |||||||||||||||  |||| ||||||||||||| |  ||||||| ||| |||||||||||||  ||||| ||| ||||||    
T  8743 taatactattatagtagattttcttcctggcttggatgtccccagatgtaggtgacgttgcaccgtactgggttaacaaata 8824  T

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Target: scaffold0032 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 103163 - 103096
Alignment:
Q  26 tagtgaatttccttcctggcttggtagcccc-agacgtatgtgacgttgcaccaaactggattatcaaa 93  Q
    ||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||  |||||| ||| ||||    
T  103163 tagtggatttccttcctggcttggtagcccctaga-gtaggtgacgttgcactgaactgggttaacaaa 103096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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