View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_low_22 (Length: 353)
Name: NF17978_low_22
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 335
Target Start/End: Original strand, 36408017 - 36408336
Alignment:
| Q |
16 |
atccaagattgaatttagaaccttctgatgagaatggacaccgtagacttttcgagtcgtttcagaaagaagatactgcagcagcagacaatgaagaggc |
115 |
Q |
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| T |
36408017 |
atccaagattgaatttagaaccttctgatgagaatggacaccgtagacttttcgagtcgtttcagaaagaagatactgcagcagcagacaataaagaggc |
36408116 |
T |
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| Q |
116 |
taaagaaatttttgtttcagaaaaaactgtcgtagaatgtacacccgaatcacttgnnnnnnnctcctcaactgaaagagaatctggcagcttgataagc |
215 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||| || |
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| T |
36408117 |
taaagaaatttttgtttcagaaaaaactgttgtagaatgtacacccgaatcactcgaaaaaaactcctcaactgaaagagaatctggcagtttgatacgc |
36408216 |
T |
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| Q |
216 |
acttctgagaatccaatttgcaatgaggaattgtattgtgagtttccaccgnnnnnnnncatggggaagaacaacaagtctggtcaatcaagtagttcaa |
315 |
Q |
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| T |
36408217 |
acttctgagaatccaatttgcaatgaggaattgtattgtgagtttccaccgaaaaaaaacatggggaaaaacaacaagtctggtcaatcaagtagttcaa |
36408316 |
T |
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| Q |
316 |
atgctagaaaagggtccaaa |
335 |
Q |
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|||||||||||||||||||| |
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| T |
36408317 |
atgctagaaaagggtccaaa |
36408336 |
T |
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