View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_low_23 (Length: 350)
Name: NF17978_low_23
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 3652738 - 3652410
Alignment:
| Q |
18 |
gaaagaagatttaaaatttcacttgnnnnnnntggctgagtttttggattgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataata |
117 |
Q |
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| T |
3652738 |
gaaagaagatttaaaatttcacttgaaaaaaatggctgagtttttggatcgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataata |
3652639 |
T |
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| Q |
118 |
aagttgtgtagttttgagaaaatgaaggggttggagataaataagacaggaacatttggaaggagctttgagaataagttcttgtttagaaaaggtgaag |
217 |
Q |
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| T |
3652638 |
aagttgtgtagttttgagaaaatgaaggggttggagataaataatacaggaacatttggaaggaactttgagaataagttcttgtttagaaaaggtgaag |
3652539 |
T |
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| Q |
218 |
ttggtgattggagtaattatctttcaccttcaatggttgaaaaattgtccaaggtcattgaagagaagttaggtggatctgatctcaattttagagtgaa |
317 |
Q |
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| T |
3652538 |
ttggtgattggagtaattatctttcaccttcaatggttgaaaaattgtccaaggtcattgaagagaagttaggtggatctgatctcaattttagagtgaa |
3652439 |
T |
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| Q |
318 |
atagggttgcttcaactcctatgtttctc |
346 |
Q |
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| T |
3652438 |
atagggttgctacaactcctatgtttctc |
3652410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 298
Target Start/End: Complemental strand, 1626544 - 1626301
Alignment:
| Q |
55 |
gagtttttggattgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataataaagttgtgtagttttgagaaaatgaaggggttggaga |
154 |
Q |
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| T |
1626544 |
gagtttttgggttgtccttttactcaagaggaagaaagtaatggtgtgattgaaaatataatcaatttatgtagctttgaaaagatgaaaggattggaag |
1626445 |
T |
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| Q |
155 |
taaataagacaggaacatttggaaggagctttgagaataagttcttgtttagaaaaggtgaagttggtgattggagtaattatctttcaccttcaatggt |
254 |
Q |
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| T |
1626444 |
caaataaatctggagtcttgggaaagatttatgacaaaaagtacttctttcgaaagggagaaataggggattggattaattatctttctccttcaatggt |
1626345 |
T |
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| Q |
255 |
tgaaaaattgtccaaggtcattgaagagaagttaggtggatctg |
298 |
Q |
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| T |
1626344 |
agataagttatccaaaatcatagaagaaaaattaagtggatctg |
1626301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 1617994 - 1617915
Alignment:
| Q |
55 |
gagtttttggattgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataataaagttgtgtagttttga |
134 |
Q |
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| T |
1617994 |
gagtttttgggttgtccttttactcaagaggaggaaagtaatggtgtgattgaaaatattatcaatttatgtagctttga |
1617915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 294
Target Start/End: Complemental strand, 4506242 - 4506131
Alignment:
| Q |
183 |
ctttgagaataagttcttgtttagaaaaggtgaagttggtgattggagtaattatctttcaccttcaatggttgaaaaattgtccaaggtcattgaagag |
282 |
Q |
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| T |
4506242 |
ctttgagaacaagttcttctttagaaaggcagaagtaggagattggataaattatctttctccttgaatggaagaaaaactatccaaaatcatagaagaa |
4506143 |
T |
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| Q |
283 |
aagttaggtgga |
294 |
Q |
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| T |
4506142 |
aagttaagtgga |
4506131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 15751676 - 15751740
Alignment:
| Q |
223 |
gattggagtaattatctttcaccttcaatggttgaaaaattgtccaaggtcattgaagagaagtt |
287 |
Q |
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| T |
15751676 |
gattggattaactacctttctccttcaatggtagaaaaactatccaaaatcattgaagagaagtt |
15751740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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