View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17978_low_25 (Length: 342)
Name: NF17978_low_25
Description: NF17978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17978_low_25 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 342
Target Start/End: Complemental strand, 32396096 - 32395766
Alignment:
| Q |
12 |
atgaaatgtgaatgctgtaactacaacaggtactgcagtgaacaaatcaaagaatgatgtctggtagtctaatcgaggaaccaatttaggagtttgtgtt |
111 |
Q |
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| T |
32396096 |
atgaaatgtgaatgctgtaactacaacaggtactgcagtgaacaaatcaaagaatgatgtctggtagtctaatcgaggaaccaatttaggagtttgtgtt |
32395997 |
T |
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| Q |
112 |
tttccttgcaccaaagcaacaatagccaacgcagaacaaatggtaacaaatgccacagcaagaagagttgatattccagaactgtacttcaaagattctg |
211 |
Q |
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| T |
32395996 |
tttccttgcaccaaagcaacaatagccaacccagaacaaatggtaacaaatgccacagcaagaagagttgatattccagaactgtacttcaaagattctg |
32395897 |
T |
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| Q |
212 |
acaaatttcaaaacagcataaaacaaaaaacaataacaaatatcatcaatctctgccacttaatctcctcaactcaaaacgaaaaaagagcatgtttgga |
311 |
Q |
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| T |
32395896 |
acaaatttcaaaacagcataaaacaaaaaacaataacaaatatcatcaatctctgccacttaatctcctcaactcaaaacgaaaaaagagcatgtttgga |
32395797 |
T |
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| Q |
312 |
atcacgcagaatatgataaaatcacaatggc |
342 |
Q |
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| T |
32395796 |
attacgcagaatatgataaaatcacaatggc |
32395766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 36139043 - 36138861
Alignment:
| Q |
12 |
atgaaatgtgaatgctgtaactacaacaggtactgcagtgaacaaatcaaagaatgatgtctggtagtctaatcgaggaaccaatttaggagtttgtgtt |
111 |
Q |
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|||||||||| | || || |||| ||||| ||||||||||| | ||||||||| ||||| || | ||| || |||||||||||| | || | ||||||| |
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| T |
36139043 |
atgaaatgtgtaggcagtgactatgacaggaactgcagtgaaaagatcaaagaaagatgtttgatggtccaaacgaggaaccaatcttggtgattgtgtt |
36138944 |
T |
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| Q |
112 |
tttccttgcaccaaagcaacaatagccaacgcagaacaaatggtaacaaatgccacagcaagaagagttgatattccagaact |
194 |
Q |
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| T |
36138943 |
tttccttccacaagtgcaacaattgccaagacagaacatgttgtaacaaatgccacagctagaagagttgatactgcagaact |
36138861 |
T |
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